View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15788_high_7 (Length: 381)
Name: NF15788_high_7
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15788_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 16196321 - 16195968
Alignment:
| Q |
20 |
acatcatcaagggatgaaaatgagaattcatagaagtttttatcaagggacgtgattccccactttctcagtagtttccaaaaggtcgatagtttggtgc |
119 |
Q |
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| T |
16196321 |
acatcatcaagggatgaaaatgagaattcataaaagtttttatcaagggaagtgattccccactttcttagtggtttccaaaaggtcgatagtttggtgc |
16196222 |
T |
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| Q |
120 |
acaaaacatccactcttaatagggtagcacccttgggccaaattattctatcgtgcaagttgcgtttgcacgtttctactccagcaagatactcatcttc |
219 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
16196221 |
acaaaacatccactcttaatagggtagcatccttgggccaaattattctatcgtgcaagttacgtttgcacgtttctactccagcatgatactcatcttc |
16196122 |
T |
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| Q |
220 |
tggtattgtgatagcaattctacgacctttagcacaaagttgaggtagctgactcaacggtatgtcacaaacgtgttgttgagaacttgagcaaaagtca |
319 |
Q |
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| T |
16196121 |
tggtattgtgatagcaattctacgacctttagcacaaagttgaggtagctgactcaa-ggtatgtcacaaacgtgttgttgagaacttgagcaaaagtct |
16196023 |
T |
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| Q |
320 |
tatgttgtgcgagtggattcaaaatgtattggatgattgattgagatgatgatgt |
374 |
Q |
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| T |
16196022 |
tatgttgtgcgagcggattcaaaatgtcttggatgattgattgcgatgattatgt |
16195968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 23496187 - 23496533
Alignment:
| Q |
20 |
acatcatcaagggatgaaaatgagaattcatagaagtttttatcaagggacgtgattccccactttctcagtagtttccaaaaggtcgatagtttggtgc |
119 |
Q |
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| T |
23496187 |
acatcttcaagggatgaaaatgagaattcatagaagcctttatcaagggatgtgatcccccactttcccaatgatttctaaagggttgatagtttggtac |
23496286 |
T |
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| Q |
120 |
acaaaacatccactcttaatagggtagcacccttgggccaaattattctatcgtgcaagttgcgtttgcacgtttctactccagcaagatactcatcttc |
219 |
Q |
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|||| ||| |||||| || | ||||||||||| |||||||||||||||| |||||| ||| ||||||||||||| |||||| |||||||||||| ||| |
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| T |
23496287 |
gcaaagcattcactctcaacggagtagcacccttaggccaaattattctattgtgcaaattgtgtttgcacgtttccactccatcaagatactcatattc |
23496386 |
T |
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| Q |
220 |
tggtattgtgatagcaattctacgacctttagcacaaagttgaggtagctgactcaacggtatgtcacaaacgtgttgttgagaacttgagcaaaagtca |
319 |
Q |
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| T |
23496387 |
tggtatcgtgattgcaattctatgatctttaacacaaggttgaggtagctgactcaacggtatgt-acaaac--actgttgagagcttaagcaaaagttt |
23496483 |
T |
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| Q |
320 |
tatgttgtgcgagtggattcaaaatgtattggatgattgattgagatgat |
369 |
Q |
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| T |
23496484 |
tttgttgtgcgagtggtttcaaagtgtttcggatgattggttgagatgat |
23496533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 284
Target Start/End: Complemental strand, 40541569 - 40541392
Alignment:
| Q |
105 |
tcgatagtttggtgcacaaaacatccactcttaatagggtagcacccttgggccaaattattctatcgtgcaagttgcgtttgcacgtttctactccagc |
204 |
Q |
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||||||||||||||| ||| |||| ||||| ||| | || |||||||| | ||||||||||||| ||| ||| ||| |||||| ||||| | |||| | |
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| T |
40541569 |
tcgatagtttggtgcgcaaggcatctactctcaatggagttgcacccttagaccaaattattctaccgtacaaattg--tttgcatgtttccaatccaac |
40541472 |
T |
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| Q |
205 |
aagatactcatcttctggtattgtgatagcaattctacgacctttagcacaaagttgaggtagctgactcaacggtatgt |
284 |
Q |
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| T |
40541471 |
gagatattcatcttttgatattgtaattgcaattctatcacctttaacacaaagttgaagtagttgactcaacggaatgt |
40541392 |
T |
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