View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15788_high_8 (Length: 377)
Name: NF15788_high_8
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15788_high_8 |
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| [»] scaffold0111 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 13581095 - 13581458
Alignment:
| Q |
1 |
atgggcatctgaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13581095 |
atgggcatctgaggatggatgtgtcacaagtgcaccctgaatccgggga-cctccaactccttccgtgattatggactaactcgttccacatcatccgaa |
13581193 |
T |
|
| Q |
101 |
agcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacacacaaggatgtg |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13581194 |
agcacgccagcgtgcacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacacgcaaggatgtg |
13581293 |
T |
|
| Q |
201 |
tttgtgtttgtgttggagccgcagtgatggcaacatcataagcaacaattatttgttgtggctccgtaagtgctgaaaatgcattggatgaacctatacc |
300 |
Q |
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| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13581294 |
tctgtgtttgtgttggagccgcagtggtggcaacatcataagcaacaattatttgttgtggctctataagtgctgaaaatgcattggatgaacctatacc |
13581393 |
T |
|
| Q |
301 |
gggaggattctcttttgtaggcacccactgaattttcttgactggaatctgcgccttcccctttg |
365 |
Q |
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| T |
13581394 |
gggaggattctcttttgtaggcacccactgaattttcttgactggaatttgcgccttcccctttg |
13581458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 9284448 - 9284263
Alignment:
| Q |
1 |
atgggcatctgaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccgaa |
100 |
Q |
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|
|||||||| ||||||||||||| ||||| ||||| | || |||| ||| ||| |||||||| ||| |||| | | | ||||||||||||||||||||| |
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| T |
9284448 |
atgggcatttgaggatggatgtatcacaggtgcatcgtggatccggggtaccaccaactccccccgcgattctaaatttacttgttccacatcatccgaa |
9284349 |
T |
|
| Q |
101 |
agcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacac |
189 |
Q |
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|||||| || || |||||||||| |||||| ||||||||| || || ||||||| ||||| |||||||| |||||||||||||| |
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| T |
9284348 |
agcacgtcaatgtgcacatcatcag---gggaagctaactccaaaactaggtgcgaaggcaaagagccttgagggatctcatcagacac |
9284263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 38500923 - 38500984
Alignment:
| Q |
266 |
gtaagtgctgaaaatgcattggatgaacctataccgggaggattctcttttgtaggcaccca |
327 |
Q |
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|||||||||| |||||| ||||||||||||||||| | ||||| ||||| |||| |||||| |
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| T |
38500923 |
gtaagtgctgcaaatgctttggatgaacctataccagatggattttctttcgtagacaccca |
38500984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 20951570 - 20951455
Alignment:
| Q |
11 |
gaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccgaaagcacgccag |
110 |
Q |
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|||||||||| |||| || ||||| |||||||| | ||| ||||||||||| ||||| || || | |||| |||||||||||||||||||||||| || |
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| T |
20951570 |
gaggatggatatgtctcatgtgcattctgaatccggagaatctccaactcctcccgtggttctgaattaacatgttccacatcatccgaaagcacgtcat |
20951471 |
T |
|
| Q |
111 |
cgtacacatcatcaac |
126 |
Q |
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||| |||||||||||| |
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| T |
20951470 |
cgttcacatcatcaac |
20951455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 10288102 - 10288211
Alignment:
| Q |
80 |
acttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatct |
179 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| || ||||| || |||||| ||||||||| | ||||| ||||| ||||| ||||| || |||| |
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| T |
10288102 |
acttgttccacatcatccgaaagcatgacagcgtgcaaatcat---caggggaagctaactccaatattgggcgtgaaggcaaagagccttgggggatct |
10288198 |
T |
|
| Q |
180 |
catcagacacaca |
192 |
Q |
| |
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| ||||||||||| |
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|
| T |
10288199 |
cctcagacacaca |
10288211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 10303819 - 10303927
Alignment:
| Q |
80 |
acttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatct |
179 |
Q |
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||||||||||||| |||| |||||||| |||||| |||||||||| |||||| ||||||||| || ||| || |||| ||||| ||||| || |||| |
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| T |
10303819 |
acttgttccacat-atccaaaagcacgacagcgtgcacatcatcag---gggaagctaactccaatactgggtgcaaaggcaaagagccttgggggatct |
10303914 |
T |
|
| Q |
180 |
catcagacacaca |
192 |
Q |
| |
|
| ||||||||||| |
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| T |
10303915 |
cctcagacacaca |
10303927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 21492631 - 21492761
Alignment:
| Q |
52 |
ctccaactccttccgtgattatggactaacttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacgggg |
151 |
Q |
| |
|
||||||||||| |||||||| || | |||||||||||||||||||||||||||| || ||| |||||||| ||||||||| |||||||||||| ||| |
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| T |
21492631 |
ctccaactcctcccgtgattctgaataaacttgttccacatcatccgaaagcacgtcatcgtgcacatcat---caagggaagctaactccaacacaggg |
21492727 |
T |
|
| Q |
152 |
cgcgaaggtaaagaaccttgaggaatctcatcag |
185 |
Q |
| |
|
| ||| || || | ||||| || |||||||||| |
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| T |
21492728 |
ctcgacggcaatgttccttgggggatctcatcag |
21492761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 33065794 - 33065900
Alignment:
| Q |
80 |
acttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatct |
179 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||||||| |||||| ||||||| |||| ||||||||||| ||||| ||||| || |||| |
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|
| T |
33065794 |
acttgttccacggcatccgaaagcacgtcagcgtgcacatcatcag---gggaagctaactccgacactgggcgcgaaggcaaagatccttgggggatct |
33065890 |
T |
|
| Q |
180 |
catcagacac |
189 |
Q |
| |
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| |||||||| |
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|
| T |
33065891 |
cctcagacac |
33065900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 29042379 - 29042254
Alignment:
| Q |
1 |
atgggcatctgaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccgaa |
100 |
Q |
| |
|
||||||||| |||||||||| |||| || ||||| |||||| | ||||| ||||||||||| ||||| || | | |||| |||||||||||||||||| |
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|
| T |
29042379 |
atgggcatccgaggatggatttgtctcatgtgcattctgaattcggggaatctccaactcctcccgtggttccgaattaacatgttccacatcatccgaa |
29042280 |
T |
|
| Q |
101 |
agcacgccagcgtacacatcatcaac |
126 |
Q |
| |
|
|||||| || || |||||||||||| |
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|
| T |
29042279 |
agcacgtcattgtgcacatcatcaac |
29042254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 13330304 - 13330387
Alignment:
| Q |
23 |
gtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattat-ggactaacttgttccacatcatccgaaagcacg |
106 |
Q |
| |
|
|||||||||||| ||||||||| ||||| ||||||||||| || ||||| ||||| || |||||| || |||||||||||||| |
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|
| T |
13330304 |
gtcacaagtgcatcctgaatccggggaatctccaactcctcccaa-attatcggacttacatgttcctcaacatccgaaagcacg |
13330387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 226
Target Start/End: Original strand, 46049 - 46232
Alignment:
| Q |
40 |
aatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaac |
139 |
Q |
| |
|
||||||||| | ||||||||||| |||||||| || | ||||||||||||||||||| |||||||| || ||| || |||| ||||||||| |||| |
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|
| T |
46049 |
aatccagggtatctccaactcctcccgtgattctgaataaacttgttccacatcatccaaaagcacgtcatcgtgca---catcggcaagggaagctaac |
46145 |
T |
|
| Q |
140 |
tccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacacacaaggatgtgtttgtgtttgtgttggagccgcagtg |
226 |
Q |
| |
|
|||||||| |||| ||| | || | |||| || ||||||||||||||||| || ||||||| | ||||||||||||||||| |
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|
| T |
46146 |
tccaacacagggctcgacgtcaatgtttcttgggggatctcatcagacacacaggggggtgtttgagcaagtgttggagccgcagtg |
46232 |
T |
|
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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 4459 - 4516
Alignment:
| Q |
270 |
gtgctgaaaatgcattggatgaacctataccgggaggattctcttttgtaggcaccca |
327 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| | ||||| |||||||||| |||||| |
|
|
| T |
4459 |
gtgctgcaaatgctttggatgaacctataccagatggattttcttttgtagacaccca |
4516 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 11293604 - 11293700
Alignment:
| Q |
270 |
gtgctgaaaatgcattggatgaacctataccgggaggattctcttttgtaggcacccactgaattttcttgactggaatctgcgccttcccctttgc |
366 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| | ||||| ||||| |||| |||||| ||| ||| || |||| ||||||| |||||| ||||| |
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|
| T |
11293604 |
gtgctgcaaatgctttggatgaacctataccagatggattttctttcgtagacacccagtgaggttttgtggctggtatctgcgtcttcccttttgc |
11293700 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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