View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15788_low_1 (Length: 261)

Name: NF15788_low_1
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15788_low_1
NF15788_low_1
[»] chr7 (7 HSPs)
chr7 (1-256)||(29460339-29460594)
chr7 (108-256)||(43970045-43970193)
chr7 (89-249)||(41605351-41605511)
chr7 (108-236)||(513855-513983)
chr7 (108-237)||(31802468-31802597)
chr7 (133-237)||(18221418-18221522)
chr7 (183-243)||(47251556-47251616)
[»] chr5 (3 HSPs)
chr5 (66-200)||(13020906-13021044)
chr5 (66-200)||(13092430-13092568)
chr5 (108-256)||(10813075-10813223)
[»] scaffold0996 (1 HSPs)
scaffold0996 (108-254)||(1480-1626)
[»] chr1 (6 HSPs)
chr1 (108-237)||(33978131-33978260)
chr1 (180-256)||(38599102-38599178)
chr1 (181-249)||(317372-317440)
chr1 (180-248)||(49508616-49508684)
chr1 (180-256)||(12458717-12458792)
chr1 (108-256)||(28037648-28037796)
[»] chr2 (2 HSPs)
chr2 (180-243)||(37670652-37670715)
chr2 (133-256)||(36756886-36757009)
[»] chr4 (4 HSPs)
chr4 (108-237)||(3914766-3914894)
chr4 (181-237)||(3925864-3925920)
chr4 (133-244)||(54421351-54421462)
chr4 (133-237)||(38761333-38761437)
[»] chr3 (5 HSPs)
chr3 (180-248)||(4741528-4741596)
chr3 (108-256)||(52964080-52964228)
chr3 (108-256)||(54548257-54548405)
chr3 (198-256)||(13102156-13102214)
chr3 (220-256)||(30355708-30355744)
[»] scaffold0024 (1 HSPs)
scaffold0024 (183-237)||(69003-69057)
[»] scaffold0839 (1 HSPs)
scaffold0839 (180-256)||(4565-4641)
[»] scaffold0010 (1 HSPs)
scaffold0010 (180-248)||(236594-236662)
[»] chr6 (1 HSPs)
chr6 (180-256)||(16863316-16863391)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 29460594 - 29460339
Alignment:
Q  1 ggactgtaagtctttagttgatgcatttgctacttctaatgtccctctcaatgagtttaaggacctcatatcacaatgtaggaatctcttagataattct 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29460594 ggactgtaagtctttagttgatgcacttgctacttctaatgtccctctcaatgagtttaaggacctcatatcacaatgtaggaatctcttagataattct 29460495  T
Q  101 gactttgagtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgt 200  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29460494 gactttgagtgtcttatgttcggaggaaagccaataaggttgcccatagtattgctagagctttcttatttaatcttatcccccatattttctatgatgt 29460395  T
Q  201 accatctactttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29460394 accatctactttataccctttaattatgaatgaaatgtattaattttgcctttgct 29460339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 256
Target Start/End: Original strand, 43970045 - 43970193
Alignment:
Q  108 agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 207  Q
    |||||| |||||| | ||| |||  |||||||||||  ||||||||| |||||| | |||||  |||| || ||||||||||||||||||||||||||||    
T  43970045 agtgtcatatgttcgtaggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccccatattttctatgatgtaccatct 43970144  T
Q  208 actttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    ||||| |||||||| |||||||| |||||| |||||| |||||||||||    
T  43970145 actttgtaccctttgattatgaacgaaatgcattaatcttgcctttgct 43970193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 41605351 - 41605511
Alignment:
Q  89 ttagataattctgactttg-agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccata 187  Q
    |||||||| || ||||||| |||||| ||||||| |||| | |  |||||||||||  ||||||||| |||||| | |||||  ||||| | ||||||||    
T  41605351 ttagataaatccgactttgtagtgtcgtatgtttagaggtaggcaaataaggttgctcatagtattgctagagcgtccttatccaatctcaacccccata 41605450  T
Q  188 ttttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaattttgc 249  Q
    |||| ||| |||||||||||||||| ||||| || ||||||||||||||| |||||| ||||    
T  41605451 ttttttataatgtaccatctactttgtaccc-ttgattatgaatgaaatgcattaatcttgc 41605511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 513855 - 513983
Alignment:
Q  108 agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 207  Q
    |||||| |||||||||||| |||  |||| ||||||  ||||||||| |||||||| ||||| | ||| || || |||||||||  ||| |||||| |||    
T  513855 agtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctaacctccatatttttaatgttgtaccttct 513954  T
Q  208 actttataccctttaattatgaatgaaat 236  Q
    ||||| ||| | ||||||| |||||||||    
T  513955 actttgtactccttaattacgaatgaaat 513983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 31802468 - 31802597
Alignment:
Q  108 agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 207  Q
    |||||| |||||| ||||| |||  |||||||||||  ||||||||| |||||||| ||||| | ||| || || |||||| ||  ||| ||| || |||    
T  31802468 agtgtcgtatgttcggaggcaagctaataaggttgctcatagtattgctagagcttccttatgtcatcctagcctccatatatttaatgttgtgccttct 31802567  T
Q  208 actttataccctttaattatgaatgaaatg 237  Q
    ||||| ||| | |||||||| |||| ||||    
T  31802568 actttgtactccttaattattaatggaatg 31802597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 18221522 - 18221418
Alignment:
Q  133 aataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatctactttataccctttaattatgaatg 232  Q
    |||||||||||  ||| ||||| |||||| | ||||| | | | || |||| ||| |||| ||||||||||||||||| | ||| ||||| ||||||||     
T  18221522 aataaggttgctcatactattgctagagcatccttatctcaccctagcccctatactttcaatgatgtaccatctactatgtactctttatttatgaata 18221423  T
Q  233 aaatg 237  Q
    |||||    
T  18221422 aaatg 18221418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 47251556 - 47251616
Alignment:
Q  183 ccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaa 243  Q
    |||||||||||||||||||||| | | | | ||| |||||||||||||| ||||| |||||    
T  47251556 ccatattttctatgatgtaccacccattgtgtactctttaattatgaataaaatgcattaa 47251616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 200
Target Start/End: Complemental strand, 13021044 - 13020906
Alignment:
Q  66 tcatatcacaatgtaggaatctctt---agataattctgactttg-agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagc 161  Q
    |||||||||||||||||||||| ||   ||||||  | ||||||| |||||| |||||| ||||| |||  ||||||||||| |||||||||| ||||||    
T  13021044 tcatatcacaatgtaggaatctattgttagataaacccgactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagc 13020945  T
Q  162 tttcttatttaatcttatcccccatattttctatgatgt 200  Q
     | |||||  |||| || |||||||||||||||||||||    
T  13020944 gtccttatccaatcctaacccccatattttctatgatgt 13020906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 200
Target Start/End: Complemental strand, 13092568 - 13092430
Alignment:
Q  66 tcatatcacaatgtaggaatctctt---agataattctgactttg-agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagc 161  Q
    |||||||||||||||||||||| ||   ||||||  | ||||||| |||||| |||||| ||||| |||  ||||||||||| |||||||||| ||||||    
T  13092568 tcatatcacaatgtaggaatctattgttagataaacccgactttgtagtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagc 13092469  T
Q  162 tttcttatttaatcttatcccccatattttctatgatgt 200  Q
     |  ||||  |||| || |||||||||||||||||||||    
T  13092468 gtcgttatccaatcctaacccccatattttctatgatgt 13092430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 256
Target Start/End: Complemental strand, 10813223 - 10813075
Alignment:
Q  108 agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 207  Q
    |||||| ||| || ||||| |||  |||| ||||||  ||||||| | |||||||| ||||| | ||| || ||||||| |||| |||  |||||| ||     
T  10813223 agtgtcatatattcggaggcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttttatagtgtaccttca 10813124  T
Q  208 actttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    ||||| ||| ||||  |  ||||||||||| ||||||||||||||||||    
T  10813123 actttgtactctttgttcttgaatgaaatgcattaattttgcctttgct 10813075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 254
Target Start/End: Complemental strand, 1626 - 1480
Alignment:
Q  108 agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 207  Q
    |||||| |||||| ||||| |||  |||| ||||||  ||||||||| |||||||| ||||| | ||| || ||||||||||||  ||| |||||| |||    
T  1626 agtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatatttttaatgttgtaccttct 1527  T
Q  208 actttataccctttaattatgaatgaaatgtattaattttgcctttg 254  Q
    ||||| ||| | ||||||||||||||||||  ||||| | |||||||    
T  1526 actttgtactccttaattatgaatgaaatgacttaatatagcctttg 1480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 33978260 - 33978131
Alignment:
Q  108 agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 207  Q
    |||||| |||||| ||||| |||  |||| ||||||  ||||||||| |||||||| ||||| | ||| || ||||||||||||  ||| |||||| |||    
T  33978260 agtgtcatatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatatttttaatgttgtaccttct 33978161  T
Q  208 actttataccctttaattatgaatgaaatg 237  Q
    ||||| ||| | ||||||||||||||||||    
T  33978160 actttgtactccttaattatgaatgaaatg 33978131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 38599102 - 38599178
Alignment:
Q  180 cccccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    |||||||||||| | |||||||||  |||||||||||||||||||| ||||||||||| ||||| ||| | ||||||    
T  38599102 cccccatattttttgtgatgtaccgactactttataccctttaattgtgaatgaaatgaattaactttacttttgct 38599178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 317440 - 317372
Alignment:
Q  181 ccccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaattttgc 249  Q
    ||||||||||   ||||||||||||||||||| ||| |||| ||||| ||||||||| |||||| ||||    
T  317440 ccccatatttgtcatgatgtaccatctactttgtactctttgattataaatgaaatgcattaatcttgc 317372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 49508616 - 49508684
Alignment:
Q  180 cccccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaattttg 248  Q
    ||||||||||||||||||||||||||||| |||  || ||||| |  ||||||| ||| ||||||||||    
T  49508616 cccccatattttctatgatgtaccatctagtttgaacactttattattgaatgatatgaattaattttg 49508684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 12458792 - 12458717
Alignment:
Q  180 cccccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    |||||||||||||||| |||||||   |||||| ||  |||| ||||||||||||||| ||||| ||| ||||||||    
T  12458792 cccccatattttctataatgtaccgcttactttgtattctttgattatgaatgaaatgcattaacttt-cctttgct 12458717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 256
Target Start/End: Original strand, 28037648 - 28037796
Alignment:
Q  108 agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 207  Q
    |||||| ||| || ||||| |||| |||| ||||||  ||||||| | ||||||||  |||| | ||| || ||||||| |||| |||  |||||| ||     
T  28037648 agtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagagcttctttatctcatcctagcccccatcttttttatagtgtaccttca 28037747  T
Q  208 actttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    | ||| ||| ||||  |  ||||||||||| ||||||||||||||||||    
T  28037748 aatttgtactctttgttcttgaatgaaatgcattaattttgcctttgct 28037796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 37670715 - 37670652
Alignment:
Q  180 cccccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaa 243  Q
    |||||||||||| |||||||||||  ||||||| ||||||||||||||| |||||||| |||||    
T  37670715 cccccatattttttatgatgtaccgactactttgtaccctttaattatggatgaaatgaattaa 37670652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 256
Target Start/End: Complemental strand, 36757009 - 36756886
Alignment:
Q  133 aataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatctactttataccctttaattatgaatg 232  Q
    ||||| |||||  ||||||||| |||||||| |||||   ||| || |||||||||||||||| ||||| || ||||||||||| |||| ||| || ||     
T  36757009 aataaagttgctcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatgtaacaactactttatactctttgattttggatt 36756910  T
Q  233 aaatgtattaattttgcctttgct 256  Q
    | ||| |||||| |||| ||||||    
T  36756909 atatgaattaatcttgcttttgct 36756886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 3914766 - 3914894
Alignment:
Q  108 agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 207  Q
    |||||| ||||||||| || || | ||||||||||| |||| |||||  |||||||  |||| | ||| || |||| | |||||  ||| |||||| |||    
T  3914766 agtgtcgtatgtttgggggcaaataaataaggttgcttataatattgccagagcttctttatgtcatcctagcccc-agatttttaatgttgtaccgtct 3914864  T
Q  208 actttataccctttaattatgaatgaaatg 237  Q
    ||||||||| ||||||||||||||||||||    
T  3914865 actttatactctttaattatgaatgaaatg 3914894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 3925864 - 3925920
Alignment:
Q  181 ccccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatg 237  Q
    |||||||||||  ||| |||||| |||| ||||||| ||||||||||||||||||||    
T  3925864 ccccatatttttaatgttgtaccgtctattttatactctttaattatgaatgaaatg 3925920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 54421462 - 54421351
Alignment:
Q  133 aataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatctactttataccctttaattatgaatg 232  Q
    ||||||||||   ||||||||| |||||||| |||||   ||| || |||||||||||||||| ||||| || ||||||| ||| |||| ||| || |||    
T  54421462 aataaggttggtcatagtattgctagagcttccttatcacatcctagcccccatattttctatcatgtaacaactactttgtactctttgattttggatg 54421363  T
Q  233 aaatgtattaat 244  Q
    | ||| ||||||    
T  54421362 atatgaattaat 54421351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 38761437 - 38761333
Alignment:
Q  133 aataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatctactttataccctttaattatgaatg 232  Q
    |||||||||||  ||||||||| |||||| | ||||| | | | || || | || ||||| ||||||||||||||||  | ||| ||||| |||||||||    
T  38761437 aataaggttgctcatagtattgctagagcatccttatctcaccctagcctctatgttttcaatgatgtaccatctaccatgtactctttatttatgaatg 38761338  T
Q  233 aaatg 237  Q
    |||||    
T  38761337 aaatg 38761333  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 4741596 - 4741528
Alignment:
Q  180 cccccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaattttg 248  Q
    |||||||||||| | |||||||||  |||||||||||  ||||||||||||||||||| ||||| ||||    
T  4741596 cccccatattttttgtgatgtaccgactactttatactttttaattatgaatgaaatgaattaactttg 4741528  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 256
Target Start/End: Complemental strand, 52964228 - 52964080
Alignment:
Q  108 agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 207  Q
    |||||| ||| || ||||| |||| |||| ||||||  ||||||| | |||| ||| ||||| | ||| || ||||||| |||| |||  |||||||||     
T  52964228 agtgtcgtatattaggaggcaagttaatagggttgctcatagtatagctagatcttccttatctcatcctagcccccatcttttttatagtgtaccatca 52964129  T
Q  208 actttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    ||||| ||| ||||  |  ||||||||||| ||||||||||||||||||    
T  52964128 actttgtactctttgttcttgaatgaaatgcattaattttgcctttgct 52964080  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 256
Target Start/End: Complemental strand, 54548405 - 54548257
Alignment:
Q  108 agtgtcttatgtttggaggaaagtcaataaggttgcctatagtattgttagagctttcttatttaatcttatcccccatattttctatgatgtaccatct 207  Q
    |||||| ||| || ||||| |||| ||||  |||||  ||||||| | |||||||| ||||| | ||| || ||||||| |||| |||  |||||||||     
T  54548405 agtgtcgtatattaggaggcaagttaatagagttgctcatagtatagctagagcttccttatctcatcctagcccccatcttttttatagtgtaccatca 54548306  T
Q  208 actttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    ||||| ||| ||||  |  ||||||||||  ||||||||||||||||||    
T  54548305 actttgtactctttgttcttgaatgaaatccattaattttgcctttgct 54548257  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 13102214 - 13102156
Alignment:
Q  198 tgtaccatctactttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    ||||||| ||||||||||| ||||  | |||||||||| | ||||||||||||||||||    
T  13102214 tgtaccaactactttatactctttgctcatgaatgaaacgcattaattttgcctttgct 13102156  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 30355708 - 30355744
Alignment:
Q  220 ttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  30355708 ttaattatgaatgaaatatattaattttacctttgct 30355744  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 69057 - 69003
Alignment:
Q  183 ccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatg 237  Q
    ||||||||| |||||||||||   |||||| ||||||||||||||| ||||||||    
T  69057 ccatattttttatgatgtaccgattactttttaccctttaattatgcatgaaatg 69003  T

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Target: scaffold0839 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 4641 - 4565
Alignment:
Q  180 cccccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    |||||||||||||| ||||||||| |||| |||  || ||||| |  ||||||| ||| |||||||||||| |||||    
T  4641 cccccatattttctctgatgtaccgtctagtttgaacactttattattgaatgatatgaattaattttgccgttgct 4565  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 236662 - 236594
Alignment:
Q  180 cccccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaattttg 248  Q
    |||||||||||||||||||||||| |||| |||  || ||||| |  ||||||| ||| ||||||||||    
T  236662 cccccatattttctatgatgtaccgtctagtttgaacactttattattgaatgatatgaattaattttg 236594  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 16863316 - 16863391
Alignment:
Q  180 cccccatattttctatgatgtaccatctactttataccctttaattatgaatgaaatgtattaattttgcctttgct 256  Q
    |||||||||||||||| |||||||   |||||| ||  |||| ||||||||||||||| ||||| ||| ||||||||    
T  16863316 cccccatattttctataatgtaccgcttactttgtattctttgattatgaatgaaatgcattaacttt-cctttgct 16863391  T

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