View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15788_low_2 (Length: 208)
Name: NF15788_low_2
Description: NF15788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15788_low_2 |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0567 (1 HSPs) |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 17635434 - 17635612
Alignment:
| Q |
16 |
ttgaaagcgcaatgggtacccctgtatctattgatggaccgacacgtaatagagccttcggacactatacacgcaaccttgtggacattgatttatcgaa |
115 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
17635434 |
ttgaaagcgccatgggtacccctgtatctattgatggaccgacacgtaatagagccttcggacactatacacgcatccttttggacattgatttatcgaa |
17635533 |
T |
|
| Q |
116 |
gcgggtttatgatgaaatccttgttgaacgggagggcttttcttttaacgtcgaggtgcaatatgaaagacgtcctttg |
194 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17635534 |
gagggtttatgatgaaatccttgttgaacgggagggcttttcttttaacgtcgaggtgcaatatgaaagatgtcctttg |
17635612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 3008935 - 3008769
Alignment:
| Q |
28 |
tgggtacccctgtatctattgatggaccgacacgtaatagagccttcggacactatacacgcaaccttgtggacattgatttatcgaagcgggtttatga |
127 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| |||||||||||| ||||||| |
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| T |
3008935 |
tgggtacccctatttctattgatggaccgacacgtaatagagctttcggacactatgcacgcattcttgtggacattgacttatcgaagcggatttatga |
3008836 |
T |
|
| Q |
128 |
tgaaatccttgttgaacgggagggcttttcttttaacgtcgaggtgcaatatgaaagacgtcctttg |
194 |
Q |
| |
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|||||||||||||||| ||||||| ||| |||||||||| || || |||||||||||||| |||||| |
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| T |
3008835 |
tgaaatccttgttgaaagggaggggtttgcttttaacgtagaagttcaatatgaaagacgccctttg |
3008769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 15657342 - 15657176
Alignment:
| Q |
28 |
tgggtacccctgtatctattgatggaccgacacgtaatagagccttcggacactatacacgcaaccttgtggacattgatttatcgaagcgggtttatga |
127 |
Q |
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||||||||||| ||| |||||||||||| ||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
15657342 |
tgggtacccctatatttattgatggacctacacgtaatagagcctttgaacactatgcacgcatccttgtggacattgatttatcgaagagggtttatga |
15657243 |
T |
|
| Q |
128 |
tgaaatccttgttgaacgggagggcttttcttttaacgtcgaggtgcaatatgaaagacgtcctttg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
15657242 |
tgaaatccttgttgaacgggagggctttgcttttaacgtcgaagtgcaatatgaaagacgtcctttg |
15657176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 17271877 - 17272043
Alignment:
| Q |
28 |
tgggtacccctgtatctattgatggaccgacacgtaatagagccttcggacactatacacgcaaccttgtggacattgatttatcgaagcgggtttatga |
127 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||| |||||||||||||||||||| |
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| T |
17271877 |
tgggtacccctatttctattgatggaccgacacgtaatagagctttcggacactatgcactcattcttgtggacattgacttatcgaagcgggtttatga |
17271976 |
T |
|
| Q |
128 |
tgaaatccttgttgaacgggagggcttttcttttaacgtcgaggtgcaatatgaaagacgtcctttg |
194 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||| |||||| |
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| T |
17271977 |
tgaaatccttgttgaacgggaggggtttgcttttaacgtagaagtgcaatatgaaagacgccctttg |
17272043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 45270428 - 45270288
Alignment:
| Q |
42 |
tctattgatggaccgacacgtaatagagccttcggacactatacacgcaaccttgtggacattgatttatcgaagcgggtttatgatgaaatccttgttg |
141 |
Q |
| |
|
||||||||||| |||||| | |||||||| |||||||||||| |||||| ||| ||||||| || ||||| |||||||| ||||| ||||| ||||||| |
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| T |
45270428 |
tctattgatgggccgacaggaaatagagcattcggacactatgcacgcattcttatggacatcgacttatcaaagcgggtctatgacgaaattcttgttg |
45270329 |
T |
|
| Q |
142 |
aacgggagggcttttcttttaacgtcgaggtgcaatatgaa |
182 |
Q |
| |
|
|||||||||| ||| | ||||| || || |||||||||||| |
|
|
| T |
45270328 |
aacgggaggggtttgcctttaaggtggaagtgcaatatgaa |
45270288 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 14385343 - 14385177
Alignment:
| Q |
28 |
tgggtacccctgtatctattgatggaccgacacgtaatagagccttcggacactatacacgcaaccttgtggacattgatttatcgaagcgggtttatga |
127 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |
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| T |
14385343 |
tgggtacccctatttctattgatggaccgacacgtaatagagctttcggacactatgcacgcattcttgtggacattgacttatcgaagcgggtttatga |
14385244 |
T |
|
| Q |
128 |
tgaaatccttgttgaacgggagggcttttcttttaacgtcgaggtgcaatatgaaagacgtcctttg |
194 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||| |
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| T |
14385243 |
tgaaatccttgttgaacgggagggttttgcttttaacgtagaagtgcaatatgaaagacgtcctttg |
14385177 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 100882 - 101048
Alignment:
| Q |
28 |
tgggtacccctgtatctattgatggaccgacacgtaatagagccttcggacactatacacgcaaccttgtggacattgatttatcgaagcgggtttatga |
127 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
100882 |
tgggtacccctatttctattgatggaccgacacgtaatagagctttcggacactatgcacgcattcttgtggacattgacttatcgaagcgggtttatga |
100981 |
T |
|
| Q |
128 |
tgaaatccttgttgaacgggagggcttttcttttaacgtcgaggtgcaatatgaaagacgtcctttg |
194 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||| |||||| |
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|
| T |
100982 |
tgaaatccttgttgaacgggaggggtttacttttaacgtagaagtgcaatatgaaagacgccctttg |
101048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0567 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0567
Description:
Target: scaffold0567; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 978 - 1143
Alignment:
| Q |
28 |
tgggtacccctgtatctattgatggaccgacacgtaatagagccttcggacactatacacgcaaccttgtggacattgatttatcgaagcgggtttatga |
127 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| |||||||||||| ||||||| |
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|
| T |
978 |
tgggtacccctatttctattgatggaccgacacgtaatagagctttcggacactatgcacgcattcttgtggacattgacttatcgaagcggatttatga |
1077 |
T |
|
| Q |
128 |
tgaaatccttgttgaacgggagggcttttcttttaacgtcgaggtgcaatatgaaagacgtcctttg |
194 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||| |||| || || |||||||||||||| |||||| |
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|
| T |
1078 |
tgaaatccttgttgaacaggaggggtttgctttt-acgtagaagttcaatatgaaagacgccctttg |
1143 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 5815204 - 5815059
Alignment:
| Q |
45 |
attgatggaccgacacgtaatagagccttcggacactatacacgcaaccttgtggacattgatttatcgaagcgggtttatgatgaaatccttgttgaac |
144 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||| |||||| ||||||||||| || ||||| ||||||| |||||| ||||| |||||||||| |
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|
| T |
5815204 |
attgatgggccgacacgaaaaagagccttcggacactatgcacgcattcttgtggacatcgacttatcaaagcgggattatgacgaaattcttgttgaac |
5815105 |
T |
|
| Q |
145 |
gggagggcttttcttttaacgtcgaggtgcaatatgaaagacgtcc |
190 |
Q |
| |
|
||||||| ||| | ||||| || || |||||||||||| ||||||| |
|
|
| T |
5815104 |
gggaggggtttgcctttaaggtggaagtgcaatatgaacgacgtcc |
5815059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 14626 - 14759
Alignment:
| Q |
54 |
ccgacacgtaatagagccttcggacactatacacgcaaccttgtggacattgatttatcgaagcgggtttatgatgaaatccttgttgaacgggagggct |
153 |
Q |
| |
|
|||||||||||||| |||||| |||| ||| |||| | || ||||||||||| || || ||| ||||||||||||| || | |||||||||||||| | |
|
|
| T |
14626 |
ccgacacgtaatagggccttcagacattatgcacgaattctggtggacattgacttgtcaaagagggtttatgatgagattatcgttgaacgggagggtt |
14725 |
T |
|
| Q |
154 |
tttcttttaacgtcgaggtgcaatatgaaagacg |
187 |
Q |
| |
|
| | |||||||| || || ||||||||| |||| |
|
|
| T |
14726 |
tcgcctttaacgtggaagtccaatatgaacgacg |
14759 |
T |
|
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