View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_high_10 (Length: 531)
Name: NF15789_high_10
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 51739520 - 51739037
Alignment:
| Q |
1 |
gcgtattgaatattcatctctaagccaaataaaaacatgaaatttattcgacaaaagaagctcacaacttcgtagtaattcatggaattggcaggaaaga |
100 |
Q |
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| T |
51739520 |
gcgtattgaatattcatctctaagccaaataaaaacatgaaatttattcgacaaaagaagctcacaacttcgtagtaattcatggaattggcaggaaaga |
51739421 |
T |
|
| Q |
101 |
atgtttcttttatgcatcgaatatgtgacattgggcctaataccaaccctgcctgtaattcaacaatgcaatcaatgcattaataattgaaaacttcaat |
200 |
Q |
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| T |
51739420 |
atgtttcttttatgcatcgaatatgtgacattgggcctaataccaaccctgcctgtaattcaacaatgcaatcaatgcattaataattgaaaacttcaat |
51739321 |
T |
|
| Q |
201 |
gtaa-ataaataatgtag---aatgaaacaataactaatcaattaccagaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaa |
296 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739320 |
tcaatgtaaataatgtagattaatgaaacaataactaatcaattaccagaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaa |
51739221 |
T |
|
| Q |
297 |
gaagtgtgagacaacaagaatacatgacacttgcatgcccattgagtatagagggttaactagttctttattacaaaacattttgtgtgtggcatccatt |
396 |
Q |
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| T |
51739220 |
gaagtgtgagacaacaagaatacatgacacttgcatgcccattgagtatagagggttaactagttctttattacaaaacattttgtgggtggcatccatt |
51739121 |
T |
|
| Q |
397 |
gtgtgcatttaatgtgtttgtcaaaacttcaatcaataaattagacaaagaaaggaatctgatatgaaattttacgttttaacaa |
481 |
Q |
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| T |
51739120 |
gtgtggatttaatgtttttgtcaaaac-tcaatcaataaattagacaaagaaaggaatctgatatgaaattttacgttttaacaa |
51739037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 10200204 - 10200041
Alignment:
| Q |
7 |
tgaatattcatctctaagccaaataaaaacatgaaatttattcgacaaaagaagctcacaacttcgtagtaattcatggaattggcaggaaagaatgttt |
106 |
Q |
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||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||| |||| ||||||||||| | |
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| T |
10200204 |
tgaatattcatttccaagccaaataaaaacatgaaatttatgcgacaaaagaagctcactacttgatagtaatttatggaactggctggaaagaatgtct |
10200105 |
T |
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| Q |
107 |
cttttatgcatcgaatatgtgacattgggcctaataccaaccctgcctgtaattcaacaatgcaat |
172 |
Q |
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| T |
10200104 |
cttttatatatggaatatgagacattggacctaatatcaacccagcctgt--ttcaacaatgcaat |
10200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 238 - 377
Target Start/End: Complemental strand, 10199709 - 10199570
Alignment:
| Q |
238 |
attaccagaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgccca |
337 |
Q |
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||||||||||||||||||| |||||||||||| || | |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
10199709 |
attaccagaatttgtgcaatgggtccaggttggcccatagtcctaagaacaacgttgaagaagtgtgacacaacaagaatgcatgacacttgcataccca |
10199610 |
T |
|
| Q |
338 |
ttgagtatagagggttaactagttctttattacaaaacat |
377 |
Q |
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| || |||||||||||| || || | ||||||||||| |
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| T |
10199609 |
tagaacttagagggttaacaagatcatcgttacaaaacat |
10199570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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