View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_high_11 (Length: 503)
Name: NF15789_high_11
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 210 - 403
Target Start/End: Original strand, 9461758 - 9461954
Alignment:
| Q |
210 |
atcaaaatgttgctagcaattaccacttgatc---tccacaccagactcccaaacacgaacatcagagagcaaccaaaatactctatgctgctaaaacca |
306 |
Q |
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|||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
9461758 |
atcaaaatgttgctagcaattaccacttgatcactactacaccatactcccaaacacgaacagcagagagcaaccaaaatactccatgctgctaaaacca |
9461857 |
T |
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| Q |
307 |
aaaacagcttgctataccagaatctttgcaaaaccagcagccaaggtaacaactcgagccaacaaatgacggtagaaaaatttaagcaccatgcaac |
403 |
Q |
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| T |
9461858 |
aaaacagcttgctataccagaatctttgcaaaaccagcagccaaggtaacaactcgagccaacagatgacggtagaaaaatttacgcaccatgcaac |
9461954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 9461603 - 9461758
Alignment:
| Q |
26 |
ctcggtaaattcttgatatctctttgatctcataagtaataaagagactgtttgaatcttttaaattcattttcgttatactttttgttttcgaggaata |
125 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
9461603 |
ctcggtaaattcttgatatctctttggtctcataagtaataaagagaccgtttgaatcttttaaattcattttcgttacaatttttgttttcgaggaat- |
9461701 |
T |
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| Q |
126 |
taataatagtatttattgagaaattccgaggtgccaaatacttaatgggtttcagaata |
184 |
Q |
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| T |
9461702 |
--ataatagtatttattgagaaattccgaggtgccaaatacttaatgggtttcagaata |
9461758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 405 - 492
Target Start/End: Original strand, 9462014 - 9462101
Alignment:
| Q |
405 |
agaaagcaacaacatggtatcaccggtcaccttaatgttatacaccacttcttccatgaaggcatgacactattaaacaagcgttcat |
492 |
Q |
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| T |
9462014 |
agaaagcaacaccatggtatcaccagtcaccttaatgttatacaccacttcttccacgaaggcacgacactattaaacaagtgttcat |
9462101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 22191909 - 22191855
Alignment:
| Q |
58 |
taagtaataaagagactgtttgaatcttttaaattcattttcgttatactttttg |
112 |
Q |
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| T |
22191909 |
taagtaataaaaagtctgtttgagtcttttaaattaattttcgttacactttttg |
22191855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 10990617 - 10990556
Alignment:
| Q |
42 |
tatctctttgatctcataagtaataaagagactgtttgaatcttttaaattcattttcgtta |
103 |
Q |
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|||| |||||||| ||||||||||||| || |||||||| || ||||||||||| ||||||| |
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| T |
10990617 |
tatcgctttgatcccataagtaataaaaagtctgtttgagtcctttaaattcatcttcgtta |
10990556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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