View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_high_12 (Length: 501)
Name: NF15789_high_12
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 36261233 - 36260959
Alignment:
| Q |
18 |
catgaccctctcctttctttttgctttcctttacactttaaaaaatgtgagcaaaatgaatggcttgttgtcccgctcctgctagggtatcccaactttt |
117 |
Q |
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| T |
36261233 |
catgaccctctcctttctttttgatttcctttacactttaaaaaatgtgagcaaaatgaatggcttgttgtcccgctcctgctagggtatcccaactttt |
36261134 |
T |
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| Q |
118 |
agtaaaaggctcttttagttttatcctatagtaaaagaccatatatatcttcatgcctttatatttcctttcccatatcaaagagtatggaatatgtata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36261133 |
agtaaaaggctcttttagttttatcctatagtaaaagaccatatatatcttcatgcctttatatttcctttcccatatcaaagagtatggaatatgtata |
36261034 |
T |
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| Q |
218 |
attcaagatctatataccttcttagaatctatgaagaattagaactttgtgtcttcaaagacaagaaattgtcat |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36261033 |
attcaagatctatataccttcttagaatctatgaagaattagaactttgtgtcttcaaagacaagaaattgtcat |
36260959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 290 - 488
Target Start/End: Complemental strand, 36260927 - 36260729
Alignment:
| Q |
290 |
catctagcactccttattaagggcattgtatttgtactcaaaatttgagtctttgtgtgaatttactacttttaaattaagttgcttgatgtatactagg |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36260927 |
catctagcactccttattaagggcattgtatttgtactcaaaatttgagtctttgtgtgaatttactacttttaaattaagttgcttgatgtatactagg |
36260828 |
T |
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| Q |
390 |
gcatcacccttaatttgttcttatgtttcaaggcacttctttcttgtcgataaaaaggatataattcaagatttcttgtattggtcatagctttgagaa |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36260827 |
gcatcacccttaatttgttcttatgtttcaaggcacttctttcttgtcgataaaaaggatataattcaagatttcttgtattggtcatagctttgagaa |
36260729 |
T |
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