View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_high_16 (Length: 417)
Name: NF15789_high_16
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Original strand, 47663063 - 47663450
Alignment:
| Q |
20 |
ctggttgcagtggaaagcttgatggagtagctatgtggttaatcaacggtgtcactatggcnnnnnnnncatctttaaatcgttgctcttgcattcgcat |
119 |
Q |
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| T |
47663063 |
ctggttgcagtggaaagcttgatggagtagctatgtggttaatcaacggtgtcactatggcttttttttcatctttaaatcgttgctcttgcattcgtat |
47663162 |
T |
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| Q |
120 |
cgccactgaagaagacggagaagatgccaatgagttgccattgatgttcaacgatggtactctccgccatgacggtaccaccagcaggagaaggactggt |
219 |
Q |
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| T |
47663163 |
cgccactgaagaagacggagaagatgccaatgagttgccattgatgttcaacgatggtactctccgccatgacggtaccaccagcaggagaaggactggt |
47663262 |
T |
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| Q |
220 |
aaagggaagaaaagtgtacttgtccacgaacaatgatcaatgtctctttattttcatggtaagtgatatatattataatgttacatatgtgagagttttt |
319 |
Q |
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| T |
47663263 |
aaagggaagaaaagtgtacttgtccacgaacaatgatcaatgtctctttattttcatggtaagtgatatatattataatgttacatatgtgagagttttt |
47663362 |
T |
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| Q |
320 |
ctaattgtgcgttcaaatcaaagcttatgttatttctggagatgaaaaatgaatatcaattaagatgcttgtaatattctcccctttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47663363 |
ctaattgtgcgttcaaatcaaagcttatgttatttctggagatgaaaaatgaatatcaattaagatgcttgtaatattctcccctttg |
47663450 |
T |
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