View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_high_20 (Length: 390)
Name: NF15789_high_20
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 6030712 - 6030479
Alignment:
| Q |
6 |
agtagcataggaggcaggaaaacaatgaaagtaatgcaattttcattgctgtctactgtgagtctcaaccagtgtagtcatattaatttactggttcttt |
105 |
Q |
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| T |
6030712 |
agtagcatagaaggaaggaaaacaatgaaagtaatgcaattttcattgctgtctactgtgagtctcaaccagtgtagtcatattaatttactggttcttt |
6030613 |
T |
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| Q |
106 |
gtccttcacttttgaaaaatagtatagcagtaagacactagagaactttagcaaattatttataaccagaagtcggtagaggtacaaacaccaaacaaat |
205 |
Q |
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| T |
6030612 |
gtccttcacttttgtaaaata-agtagcagtaagacactagagaactttagcaaattatttataaccagaagtcggtagaggtacaaacaccaaacagat |
6030514 |
T |
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| Q |
206 |
tcataccataaaagttacatttattaggaaccttt |
240 |
Q |
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| T |
6030513 |
tcataccataaaagttgcatttattaggaaccttt |
6030479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 239 - 375
Target Start/End: Complemental strand, 6030285 - 6030147
Alignment:
| Q |
239 |
tttcctataataataagatctttgcatgcaaacatgtctgtttttt-aattgcaaaacgtttcctataataacatctttgaaggaaaaacattacccaaa |
337 |
Q |
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| T |
6030285 |
tttcctataataataagatctttgcatgcaaacatgtctgtttttttaattgcaaaacgtttcctatagtaacatctttgaaggaaaaacatttcctaat |
6030186 |
T |
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| Q |
338 |
aattccaagtatttaaccatcgtagtag-tggaaaacat |
375 |
Q |
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| T |
6030185 |
aattccaagtatttagccatcgtaggagatggaaaacat |
6030147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 6030000 - 6029948
Alignment:
| Q |
188 |
tacaaacaccaaacaaattcataccataaaagttacatttattaggaaccttt |
240 |
Q |
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|||||||| |||||||| | ||| |||||||||| |||||||||||||||||| |
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| T |
6030000 |
tacaaacaacaaacaaactgataacataaaagttgcatttattaggaaccttt |
6029948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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