View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_high_21 (Length: 390)

Name: NF15789_high_21
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_high_21
NF15789_high_21
[»] chr8 (10 HSPs)
chr8 (18-290)||(34629518-34629790)
chr8 (44-98)||(147546-147600)
chr8 (317-359)||(34629449-34629491)
chr8 (44-106)||(40518166-40518228)
chr8 (44-106)||(5915962-5916024)
chr8 (44-106)||(37544491-37544553)
chr8 (44-101)||(3670155-3670212)
chr8 (44-116)||(3669782-3669854)
chr8 (44-100)||(30441180-30441236)
chr8 (44-100)||(40579276-40579332)
[»] chr5 (8 HSPs)
chr5 (46-133)||(1028491-1028578)
chr5 (44-101)||(624291-624348)
chr5 (44-101)||(34753031-34753088)
chr5 (44-106)||(6500545-6500607)
chr5 (44-78)||(36522266-36522300)
chr5 (44-106)||(40296316-40296378)
chr5 (44-101)||(18603126-18603183)
chr5 (47-79)||(38427645-38427677)
[»] chr2 (8 HSPs)
chr2 (44-105)||(15880358-15880419)
chr2 (44-106)||(6421826-6421888)
chr2 (44-106)||(42514744-42514806)
chr2 (44-75)||(30313272-30313303)
chr2 (44-101)||(6421721-6421778)
chr2 (44-101)||(40679635-40679692)
chr2 (44-72)||(33954297-33954325)
chr2 (46-106)||(41283476-41283536)
[»] chr7 (2 HSPs)
chr7 (44-106)||(1085617-1085679)
chr7 (44-101)||(37167876-37167933)
[»] chr6 (8 HSPs)
chr6 (44-106)||(12071692-12071754)
chr6 (44-106)||(16455002-16455064)
chr6 (44-111)||(3409755-3409822)
chr6 (44-75)||(12085066-12085097)
chr6 (48-106)||(16454674-16454732)
chr6 (44-106)||(29518598-29518660)
chr6 (44-106)||(29519015-29519077)
chr6 (44-106)||(32741274-32741336)
[»] chr4 (9 HSPs)
chr4 (48-106)||(22183263-22183321)
chr4 (44-106)||(43174236-43174298)
chr4 (44-79)||(4955343-4955378)
chr4 (44-106)||(36608660-36608722)
chr4 (44-106)||(39404113-39404175)
chr4 (44-98)||(50002521-50002575)
chr4 (46-79)||(28034326-28034359)
chr4 (47-75)||(2740798-2740826)
chr4 (44-100)||(32941128-32941184)
[»] chr3 (8 HSPs)
chr3 (44-106)||(25739426-25739488)
chr3 (44-106)||(47964916-47964978)
chr3 (44-101)||(42342096-42342153)
chr3 (44-116)||(33803243-33803315)
chr3 (44-75)||(47964550-47964581)
chr3 (44-106)||(29644903-29644965)
chr3 (44-116)||(25755489-25755561)
chr3 (44-132)||(42342363-42342451)
[»] chr1 (7 HSPs)
chr1 (44-106)||(3537600-3537662)
chr1 (44-100)||(32168705-32168761)
chr1 (48-79)||(19283483-19283514)
chr1 (44-79)||(22077523-22077558)
chr1 (44-74)||(10351255-10351285)
chr1 (48-106)||(37850601-37850659)
chr1 (44-101)||(48588494-48588551)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 34629790 - 34629518
Alignment:
Q  18 gaaatgacccataatcctattgtttatgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccctctaactccct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  34629790 gaaatgacccataatcctattgtttatgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacattccctctgactccct 34629691  T
Q  118 tcagcgacccaacagaaataaatcgagtccttaggctttagaacaaataatatcaaagagttaataaggacgaagagcatggtaggttctaatgatagac 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||    
T  34629690 tcagcgacccaacagaaataaatcgagtccttagactttagaacaaataatatcaaagagttaataaggacgaagtgcatggtaggttctaatagtagac 34629591  T
Q  218 tacattcatttaacacctcatttttcttatatctatccttctatctcgtcatcaacctattatatttatcaca 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34629590 tacattcatttaacacctcatttttcttatatctatccttctatctcgtcatcaacctattatatttatcaca 34629518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 147546 - 147600
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtgg 98  Q
    ||||||||||||||||||||||||  |||||||||||||| | || |||||||||    
T  147546 tgggtaagagtgtggcgtctctcttgcttgtgcggtagttctagcattgatgtgg 147600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 34629491 - 34629449
Alignment:
Q  317 aagcatatgcacctttgagatgtgtaagaaacattttcaaact 359  Q
    |||||||||||||||||||||||||| | ||||||||||||||    
T  34629491 aagcatatgcacctttgagatgtgtagggaacattttcaaact 34629449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 40518166 - 40518228
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||||||||||||  |||||| ||| ||| | ||||||||||||||| ||||    
T  40518166 tgggtaagagtgtggcgtctctcttgcttgtgtggttgttctagccttgatgtggacggtccc 40518228  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 5915962 - 5916024
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| |||||||||| ||||    
T  5915962 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccc 5916024  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 37544553 - 37544491
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||| |||| ||| ||||||||||| ||| | |||| |||||||||| ||||    
T  37544553 tgggtaagagtgtggtgtctttcttacttgtgcggttgttctagcctcgatgtggacgatccc 37544491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 3670155 - 3670212
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacg 101  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| ||||||||||    
T  3670155 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacg 3670212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 3669782 - 3669854
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccctctaactccc 116  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| |||||||| | |||| ||| |||||    
T  3669782 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggatggtccccctagctccc 3669854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 30441180 - 30441236
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggac 100  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| |||||||||    
T  30441180 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggac 30441236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 40579332 - 40579276
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggac 100  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| |||||||||    
T  40579332 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggac 40579276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 1028578 - 1028491
Alignment:
Q  46 ggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccctctaactcccttcagcgacccaacaga 133  Q
    |||||||||||||||||||||||||||||||||| ||| | |||| |||||||||| |||| ||| ||||| |||| |||||||||||    
T  1028578 ggtaagagtgtggcgtctctctcacttgtgcggttgttctagcctcgatgtggacggtccccctagctcccctcagtgacccaacaga 1028491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 624291 - 624348
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacg 101  Q
    ||||||||||||||| |||||||||||||||| ||| ||| | |||| ||||||||||    
T  624291 tgggtaagagtgtggtgtctctctcacttgtggggttgttctagcctcgatgtggacg 624348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 34753088 - 34753031
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacg 101  Q
    ||||||||||||||||||||||||  |||||||||| ||| | |||| ||||||||||    
T  34753088 tgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacg 34753031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 6500545 - 6500607
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| |||||||||| ||||    
T  6500545 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccc 6500607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 36522300 - 36522266
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcgg 78  Q
    ||||||||||||||| |||||||||||||||||||    
T  36522300 tgggtaagagtgtggtgtctctctcacttgtgcgg 36522266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 40296378 - 40296316
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| |||||||||| ||||    
T  40296378 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccc 40296316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 18603183 - 18603126
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacg 101  Q
    |||||||||||||||| |||||||  |||||| ||||||| | |||| ||||||||||    
T  18603183 tgggtaagagtgtggcatctctcttgcttgtgtggtagttctagcctcgatgtggacg 18603126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 38427645 - 38427677
Alignment:
Q  47 gtaagagtgtggcgtctctctcacttgtgcggt 79  Q
    ||||||||||| |||||||||||||||||||||    
T  38427645 gtaagagtgtgacgtctctctcacttgtgcggt 38427677  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 15880358 - 15880419
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttcc 105  Q
    ||||||||||||||||||||||||  |||||||||| ||| | |||| ||||||||||||||    
T  15880358 tgggtaagagtgtggcgtctctcttgcttgtgcggttgttttagcctcgatgtggacgttcc 15880419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 6421826 - 6421888
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||| |||||||| ||||||| ||| ||| |||||| |||||||||| ||||    
T  6421826 tgggtaagagtgtggtgtctctctaacttgtgtggttgttctggcctcgatgtggacggtccc 6421888  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 42514744 - 42514806
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    |||||||||||||||||||||||| ||||||| ||| ||| | |||| |||||||||| ||||    
T  42514744 tgggtaagagtgtggcgtctctcttacttgtggggttgttctagcctcgatgtggacggtccc 42514806  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 30313272 - 30313303
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtg 75  Q
    ||||||||||||||||||||||||||||||||    
T  30313272 tgggtaagagtgtggcgtctctctcacttgtg 30313303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 6421721 - 6421778
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacg 101  Q
    ||||||||||||||| |||||||| ||||||| ||| |||  ||||| ||||||||||    
T  6421721 tgggtaagagtgtggtgtctctctaacttgtgtggttgttccggcctcgatgtggacg 6421778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 40679692 - 40679635
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacg 101  Q
    |||||||||||||||||||||||| ||||||| ||| ||| | | || ||||||||||    
T  40679692 tgggtaagagtgtggcgtctctcttacttgtggggttgttctagtctcgatgtggacg 40679635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 33954325 - 33954297
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcactt 72  Q
    |||||||||||||||||||||||||||||    
T  33954325 tgggtaagagtgtggcgtctctctcactt 33954297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 41283536 - 41283476
Alignment:
Q  46 ggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||||||||||   ||||| ||| ||| | ||||||||||||||| ||||    
T  41283536 ggtaagagtgtggcgtctctcttgtttgtgtggttgttctagccttgatgtggacggtccc 41283476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 1085679 - 1085617
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    |||||||||||||||||||||||| ||||||| ||| ||| | |||| |||||||||| ||||    
T  1085679 tgggtaagagtgtggcgtctctcttacttgtgtggttgttctagcctcgatgtggacggtccc 1085617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 37167876 - 37167933
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacg 101  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| ||||||||||    
T  37167876 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacg 37167933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 12071754 - 12071692
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    |||||||||||||||||||||||||||||||| ||| ||| | |||| |||||| ||| ||||    
T  12071754 tgggtaagagtgtggcgtctctctcacttgtgtggttgttctagcctcgatgtgaacggtccc 12071692  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 16455002 - 16455064
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||||||||||||  |||||||||| ||| | |||| |||||||||| ||||    
T  16455002 tgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccc 16455064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 3409755 - 3409822
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccctctaa 111  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| |||||||||| |||| ||||    
T  3409755 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccccctaa 3409822  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 12085097 - 12085066
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtg 75  Q
    ||||||||||||||||||||||||||||||||    
T  12085097 tgggtaagagtgtggcgtctctctcacttgtg 12085066  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 16454674 - 16454732
Alignment:
Q  48 taagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||||||||  |||||||||| ||| | |||| |||||||||| ||||    
T  16454674 taagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccc 16454732  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 29518598 - 29518660
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| |||||||||| ||||    
T  29518598 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccc 29518660  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 29519015 - 29519077
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| |||||||||| ||||    
T  29519015 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccc 29519077  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 32741274 - 32741336
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||| ||||||||  |||||||||| ||| | |||| |||||||||| ||||    
T  32741274 tgggtaagagtgtggtgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccc 32741336  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 22183321 - 22183263
Alignment:
Q  48 taagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||||||||||||||| |||| ||| | |||| |||||||||| ||||    
T  22183321 taagagtgtggcgtctctctcacttgtacggttgttctagcctcgatgtggacggtccc 22183263  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 43174236 - 43174298
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||| |||||||||||||||| ||| |||   ||||||||||||||| ||||    
T  43174236 tgggtaagagtgtggtgtctctctcacttgtgtggttgttcaagccttgatgtggacggtccc 43174298  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 4955378 - 4955343
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggt 79  Q
    |||||||||||||||||||||||| |||||||||||    
T  4955378 tgggtaagagtgtggcgtctctcttacttgtgcggt 4955343  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 36608722 - 36608660
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||| |||||||||||| ||| ||| ||| | |||| |||||||||| ||||    
T  36608722 tgggtaagagtgtggtgtctctctcactagtgtggttgttctagcctcgatgtggacggtccc 36608660  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 39404113 - 39404175
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||||||||||||  |||||| ||| ||| | |||| |||||||||| ||||    
T  39404113 tgggtaagagtgtggcgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtccc 39404175  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 50002521 - 50002575
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtgg 98  Q
    ||||||||||||||| |||||||| ||||||||||| ||| | |||| |||||||    
T  50002521 tgggtaagagtgtggtgtctctcttacttgtgcggttgttctagcctcgatgtgg 50002575  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 28034326 - 28034359
Alignment:
Q  46 ggtaagagtgtggcgtctctctcacttgtgcggt 79  Q
    ||||||||||||||||||||||||||| ||||||    
T  28034326 ggtaagagtgtggcgtctctctcacttatgcggt 28034359  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 2740798 - 2740826
Alignment:
Q  47 gtaagagtgtggcgtctctctcacttgtg 75  Q
    |||||||||||||||||||||||||||||    
T  2740798 gtaagagtgtggcgtctctctcacttgtg 2740826  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 32941184 - 32941128
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggac 100  Q
    |||||||||||||| |||||||||  |||||||||| ||| | |||| |||||||||    
T  32941184 tgggtaagagtgtgacgtctctcttgcttgtgcggttgttctagcctcgatgtggac 32941128  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 25739488 - 25739426
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    |||||||||||||| |||||||||  |||||||||||||| | |||| |||||||||| ||||    
T  25739488 tgggtaagagtgtgacgtctctctagcttgtgcggtagttctagcctcgatgtggacggtccc 25739426  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 47964978 - 47964916
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||||||||||||||||| |  | | ||| |||||| |||||||||||||||    
T  47964978 tgggtaagagtgtggcgtctctctcacttatatgattgttctggcctagatgtggacgttccc 47964916  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 42342153 - 42342096
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacg 101  Q
    ||||||||||||||||||||||||  |||||||||| ||| | |||| ||||||||||    
T  42342153 tgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacg 42342096  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 33803315 - 33803243
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccctctaactccc 116  Q
    ||||||||||||||||||||| ||| |||||| ||| ||| | |||| |||||||||| |||| | |||||||    
T  33803315 tgggtaagagtgtggcgtctccctctcttgtgtggttgttctagcctcgatgtggacggtcccccaaactccc 33803243  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 47964581 - 47964550
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtg 75  Q
    ||||||||||||||||||||||||||||||||    
T  47964581 tgggtaagagtgtggcgtctctctcacttgtg 47964550  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 29644965 - 29644903
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||||||||||||  ||| |||||| ||| | |||| |||||||||| ||||    
T  29644965 tgggtaagagtgtggcgtctctcttgcttatgcggttgttttagcctcgatgtggacggtccc 29644903  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 25755489 - 25755561
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccctctaactccc 116  Q
    ||||||| ||||||||||||||||  |||||||||| ||| | |||| |||||||| | |||| | |||||||    
T  25755489 tgggtaaaagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggatggtcccccgaactccc 25755561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 42342451 - 42342363
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccctctaactcccttcagcgacccaacag 132  Q
    |||||||||||||| |||||||||  |||||||||| ||| | ||||  ||||||||| |||| ||  ||||| | || ||||||||||    
T  42342451 tgggtaagagtgtgacgtctctcttgcttgtgcggttgttctagcctcaatgtggacggtccccctggctccccttagtgacccaacag 42342363  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 3537662 - 3537600
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||||||||||||||||  |||||||||| ||| | |||| |||||||||| ||||    
T  3537662 tgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtccc 3537600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 32168761 - 32168705
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggac 100  Q
    ||||||||||||||||||||||||  |||||||||| ||| | |||| |||||||||    
T  32168761 tgggtaagagtgtggcgtctctcttgcttgtgcggttgttctagcctcgatgtggac 32168705  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 79
Target Start/End: Complemental strand, 19283514 - 19283483
Alignment:
Q  48 taagagtgtggcgtctctctcacttgtgcggt 79  Q
    ||||||||||||||||||||||||||||||||    
T  19283514 taagagtgtggcgtctctctcacttgtgcggt 19283483  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 22077558 - 22077523
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggt 79  Q
    ||||||||||||||||||||||||||||| ||||||    
T  22077558 tgggtaagagtgtggcgtctctctcacttatgcggt 22077523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 74
Target Start/End: Original strand, 10351255 - 10351285
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgt 74  Q
    |||||||||||||||||||||||||||||||    
T  10351255 tgggtaagagtgtggcgtctctctcacttgt 10351285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 37850659 - 37850601
Alignment:
Q  48 taagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacgttccc 106  Q
    ||||||||||| |||||||||||||||||||| | | | |||| |||||||||| ||||    
T  37850659 taagagtgtggtgtctctctcacttgtgcggttgctctagcctcgatgtggacggtccc 37850601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 48588551 - 48588494
Alignment:
Q  44 tgggtaagagtgtggcgtctctctcacttgtgcggtagttatggccttgatgtggacg 101  Q
    |||||||||||| || |||||||| ||||||||||| ||| | |||| ||||||||||    
T  48588551 tgggtaagagtgcggtgtctctcttacttgtgcggttgttctagcctcgatgtggacg 48588494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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