View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_high_4 (Length: 615)
Name: NF15789_high_4
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 200 - 506
Target Start/End: Complemental strand, 32788127 - 32787821
Alignment:
| Q |
200 |
gcaacaagatattccaccttgatcagatcttaacaaagctttgtcaggaatgcattatcaacaatacattgaacaaatcttcagcactttctttagcatc |
299 |
Q |
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| T |
32788127 |
gcaacaagatattccaccttgatcagatcttaacaaagctttgtcaggaatgcattatcaacaatacattgaacaaatcttcagcactttctttagcatc |
32788028 |
T |
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| Q |
300 |
aaatcaaaatagcccaataacaaagttcattactttatgatgaataaatttgaacaaagtgcacccaccttcttgtcattggaaaagagacactaattca |
399 |
Q |
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| T |
32788027 |
aaatcaaaatagcccagtaacaaagttcattactttatgatgaataaatttgaacaaagtgcacccaccttcttgtcattggaaaagagacactaattca |
32787928 |
T |
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| Q |
400 |
aaacaaaataattnnnnnnntaatttttactgtgctagagattctgcggcacgaaaccgggtgcgaccctttattgaaaatggcttcataagctagaatt |
499 |
Q |
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| T |
32787927 |
aaacaaaataattaaaaaaataatttctactgtgctagagattctgcggcacgaaaccgggtgcgaccctttattgaaaatggcttcataagctagaatt |
32787828 |
T |
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| Q |
500 |
tcatagc |
506 |
Q |
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||||||| |
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| T |
32787827 |
tcatagc |
32787821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 32788248 - 32788201
Alignment:
| Q |
86 |
ccaaagtccaacaatttctaagtttaatactcccttaatcccccacct |
133 |
Q |
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| T |
32788248 |
ccaaagtccaacaatttctaagtttaatactcccttaatcccccacct |
32788201 |
T |
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