View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15789_high_47 (Length: 264)
Name: NF15789_high_47
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_high_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 22879152 - 22879383
Alignment:
| Q |
15 |
cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggtt |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
22879152 |
cagagagaagtgaatcagcaagagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaaatatttgtt |
22879251 |
T |
|
| Q |
115 |
cccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
22879252 |
cccaaaagttaatccagaagaagataaactaggcaaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgtctcatacctggtcta |
22879351 |
T |
|
| Q |
215 |
gccaaaggttctgaatgtgaacacaacaaacc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22879352 |
gccaaaggttctgaatgtgaacacaacaaacc |
22879383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 22813542 - 22813773
Alignment:
| Q |
15 |
cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggtt |
114 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||| |||||| |||||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
22813542 |
cagagagaagtgaatcagaaatagaaacagaagtatgtgacattgtcttgtccatggaagaaggatacgacaaaggaaagtcctcaaaatattcttggta |
22813641 |
T |
|
| Q |
115 |
cccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
22813642 |
cccaaaagttaatccagaagaagataaactaagcgaaggcaaatctggcaaaggtatatcccgctccaaatactgcacaacttgtctcatacctggtcta |
22813741 |
T |
|
| Q |
215 |
gccaaaggttctgaatgtgaacacaacaaacc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22813742 |
gccaaaggttctgaatgtgaacacaacaaacc |
22813773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 22896784 - 22897015
Alignment:
| Q |
15 |
cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggtt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || |||||| | ||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22896784 |
cagagagaagtgaatcagcaatagacacagaggtgtgtgacattgtgttgcccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta |
22896883 |
T |
|
| Q |
115 |
cccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta |
214 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
22896884 |
cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttgtctcatacctggtcta |
22896983 |
T |
|
| Q |
215 |
gccaaaggttctgaatgtgaacacaacaaacc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22896984 |
gccaaaggttctgaatgtgaacacaacaaacc |
22897015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 22892468 - 22892696
Alignment:
| Q |
15 |
cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggtt |
114 |
Q |
| |
|
||||||||| ||| || |||||||||||||| || || |||||| | ||| ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
22892468 |
cagagagaattgagtcggcaatagacacagaagtctgtgacattgtgttgcccatagaggaaggataagacaaaggaaagtcctcaaaaaattcttggta |
22892567 |
T |
|
| Q |
115 |
cccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
22892568 |
cccaaaagttaatccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgtctcatacatggtcta |
22892667 |
T |
|
| Q |
215 |
gccaaaggttctgaatgtgaacacaacaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22892668 |
gccaaaggttctgaatgtgaacacaacaa |
22892696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 22887907 - 22888041
Alignment:
| Q |
109 |
ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt |
208 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
22887907 |
ttggtacccaaaagttaaaccagaagaagataaactaagcgaagaaaaatctggcaaaggtgtatccctctccaaatactgtacaacttgtctcatactt |
22888006 |
T |
|
| Q |
209 |
ggtctagccaaaggttctgaatgtgaacacaacaa |
243 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
22888007 |
ggtctagccaaaggctctgaatgtgaacacaacaa |
22888041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 22803945 - 22804075
Alignment:
| Q |
109 |
ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt |
208 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22803945 |
ttggtgcccaaaagttaatccataggaagataaactaagcaatgacaaatctggtaaaggtaaatccctctccaaatactgcacaacttgtctcatactt |
22804044 |
T |
|
| Q |
209 |
ggtctagccaaaggttctgaatgtgaacaca |
239 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
22804045 |
ggtctagccaaaggctctgaatgtgaacaca |
22804075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 22829640 - 22829774
Alignment:
| Q |
109 |
ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt |
208 |
Q |
| |
|
||||| ||||||| ||| |||||| |||||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
22829640 |
ttggtacccaaaaaataaaccagaagaagataaactaagcgaaaacaaatatggcaaaggtatatccctctccaaatactgcacaacttgtctcatacct |
22829739 |
T |
|
| Q |
209 |
ggtctagccaaaggttctgaatgtgaacacaacaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
22829740 |
ggtctagccaaaggttctgaatgtgaacacaacaa |
22829774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 22870443 - 22870573
Alignment:
| Q |
109 |
ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt |
208 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22870443 |
ttggtgcccaaaagttaatccataggaagataaactaagcaatgacaaagctggtaaaggtatatccctctccaaatactgcacaacttgtctcatactt |
22870542 |
T |
|
| Q |
209 |
ggtctagccaaaggttctgaatgtgaacaca |
239 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
22870543 |
ggtctagccaaaggctctgaatgtgaacaca |
22870573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 22808229 - 22808363
Alignment:
| Q |
109 |
ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt |
208 |
Q |
| |
|
||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22808229 |
ttggtacccaaaagttaaaccagaagaagataaactaagcgaagacaaatctggcaaagctatatccctctccaaatactgcacaacttgtctcatactt |
22808328 |
T |
|
| Q |
209 |
ggtctagccaaaggttctgaatgtgaacacaacaa |
243 |
Q |
| |
|
|||||| ||| ||| |||||||| |||||||||| |
|
|
| T |
22808329 |
ggtctaaccagaggctctgaatgcaaacacaacaa |
22808363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 22874537 - 22874671
Alignment:
| Q |
109 |
ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt |
208 |
Q |
| |
|
||||| |||||||||||| ||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |
|
|
| T |
22874537 |
ttggtacccaaaagttaaaccaaaagaagataaactaagcgaagaaaaatctggcaaaggtatatccctctccaaatactgcacaacttgcctcatgctt |
22874636 |
T |
|
| Q |
209 |
ggtctagccaaaggttctgaatgtgaacacaacaa |
243 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |
|
|
| T |
22874637 |
ggtctagccaaaggctctgaatgagaacacaacaa |
22874671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 22838661 - 22838795
Alignment:
| Q |
109 |
ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt |
208 |
Q |
| |
|
||||| |||||||||||| ||| || ||||||||||||| ||||||||||||| || ||||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
22838661 |
ttggtacccaaaagttaaaccaaaagtagataaactaagcgaagacaaatctggaaagggtatatccgtctccaaatactgcacaacttgcctcatactt |
22838760 |
T |
|
| Q |
209 |
ggtctagccaaaggttctgaatgtgaacacaacaa |
243 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |
|
|
| T |
22838761 |
ggtctagccaaaggctctgaatgagaacacaacaa |
22838795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 22912331 - 22912405
Alignment:
| Q |
172 |
atccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctgaatgtgaacacaacaaacc |
246 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||| |||||||| |
|
|
| T |
22912331 |
atccctctccaaatacctcaaaacttgtctcatacttggtctagccaaagcctcacaatgtgaacataacaaacc |
22912405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 21152086 - 21151971
Alignment:
| Q |
128 |
ccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctg |
227 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || | |
|
|
| T |
21152086 |
ccagaagaagataaactaagtgaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgcctcatacttggtctagccaaaggctcgg |
21151987 |
T |
|
| Q |
228 |
aatgtgaacacaacaa |
243 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21151986 |
aatgtgaacacaacaa |
21151971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University