View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_high_53 (Length: 239)
Name: NF15789_high_53
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 53426549 - 53426338
Alignment:
| Q |
13 |
catcaaagctaagctcaatttaagagaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagt |
112 |
Q |
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| T |
53426549 |
catcaaagctaagctcaatataagagaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagt |
53426450 |
T |
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| Q |
113 |
caagatcatccttaactcctcaatcaaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatca |
212 |
Q |
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| T |
53426449 |
caagatcatccttaactcctcaatcagagaatgacaatcaagtttatattgtgtatatgggagcttcacattcaactaatggttcccttcgcgaagatca |
53426350 |
T |
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| Q |
213 |
tgcccatatttt |
224 |
Q |
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|||||||||||| |
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| T |
53426349 |
tgcccatatttt |
53426338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 44 - 216
Target Start/End: Complemental strand, 53434678 - 53434506
Alignment:
| Q |
44 |
taaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagtcaagatcatccttaactcctcaatcaaagaa |
143 |
Q |
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| T |
53434678 |
taaacatgaaaggaaatccaattttattgatattagtgttttactcactcttccttcttcttggagagtcaaggtcatacttagctaataaatcaaagaa |
53434579 |
T |
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| Q |
144 |
tgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatcatgcc |
216 |
Q |
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| T |
53434578 |
tgaaaatcaaatttatattgtgtatatgggagctacggattcaatagatggttcccttcgtaaagatcatgcc |
53434506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 214
Target Start/End: Complemental strand, 26099611 - 26099437
Alignment:
| Q |
37 |
agaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagtcaagatcatccttaactcctcaat |
136 |
Q |
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||||| |||||||||||| ||||| || || | ||| |||||| ||||||||| ||||||||| |||||||||| || |||||| ||| || ||||| |
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| T |
26099611 |
agaatgctaaacatgaaaagaaatccaattttcttgatactaacattttactctctcttcctt---cttggagagttaaaatcatctttagctactcaac |
26099515 |
T |
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| Q |
137 |
caaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatcatg |
214 |
Q |
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| T |
26099514 |
caaagaatgaaaatcaagtttatattgtgtacatgggaggtgtggattcaactaatggttcccttcgtaaagatcatg |
26099437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 53311194 - 53311123
Alignment:
| Q |
131 |
ctcaatcaaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttc |
202 |
Q |
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||||||| |||||||||| ||||||||||||||||| |||||||||||| ||||| ||||| || |||||| |
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| T |
53311194 |
ctcaatcggagaatgacaaacaagtttatattgtgtacatgggagctgcagattcaactaatagtacccttc |
53311123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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