View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_high_58 (Length: 228)

Name: NF15789_high_58
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_high_58
NF15789_high_58
[»] chr4 (3 HSPs)
chr4 (73-210)||(2464463-2464601)
chr4 (67-194)||(6736510-6736629)
chr4 (8-51)||(2464618-2464660)
[»] chr2 (3 HSPs)
chr2 (11-175)||(28173413-28173573)
chr2 (67-209)||(11951637-11951782)
chr2 (67-210)||(2743968-2744109)
[»] scaffold0312 (1 HSPs)
scaffold0312 (67-209)||(18990-19133)
[»] chr1 (1 HSPs)
chr1 (67-209)||(411437-411580)
[»] chr3 (2 HSPs)
chr3 (73-206)||(45227735-45227870)
chr3 (69-210)||(29896665-29896808)
[»] chr7 (1 HSPs)
chr7 (125-210)||(26300141-26300227)
[»] chr6 (1 HSPs)
chr6 (67-210)||(29935083-29935224)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 73 - 210
Target Start/End: Complemental strand, 2464601 - 2464463
Alignment:
Q  73 caaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaacaatttt 171  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  2464601 caaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggacataatggatgagtgaagttttcaccggtctttatccaaaccatttt 2464502  T
Q  172 taaactaaaaatttcatcctttgtaaactcattcatgct 210  Q
    | ||||||||||||||||||||| |||||||||||||||    
T  2464501 ttaactaaaaatttcatcctttgaaaactcattcatgct 2464463  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 6736510 - 6736629
Alignment:
Q  67 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 165  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||| || |||||||   |||||         ||||||||| ||||||    
T  6736510 tgaaaccaaagaaatggtgagtcacaagaattcaacgggagcatgacaaacaaagtagaaataatgggtaagtga---------cggtctttacccaaac 6736600  T
Q  166 aatttttaaactaaaaatttcatcctttg 194  Q
    |||||||||||||||| ||||||||||||    
T  6736601 aatttttaaactaaaagtttcatcctttg 6736629  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 2464660 - 2464618
Alignment:
Q  8 aagaagaaaactccaagagatttaatcctttgcaaactgtgaat 51  Q
    |||| ||||||||||||||||| |||||||||||||||||||||    
T  2464660 aagatgaaaactccaagagatt-aatcctttgcaaactgtgaat 2464618  T

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Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 28173573 - 28173413
Alignment:
Q  11 aagaaaactccaagagatttaatcctttgcaaactgtgaatctnnnnnnnnnnnnntgaaatcaaagaaatggtgagtcacaagaattcaatgggatcat 110  Q
    ||||||||||||||||||||||||||||||||||| ||| |||             ||||||||||||||||||||||||||||||||||||||| ||||    
T  28173573 aagaaaactccaagagatttaatcctttgcaaactctgactctaaaaaaaa-----tgaaatcaaagaaatggtgagtcacaagaattcaatggggtcat 28173479  T
Q  111 aacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaa 175  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  28173478 aacaaacaaagtggacataatggacaagtgaagttttcaccggtctttatccaaacaatttttaaa 28173413  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 11951782 - 11951637
Alignment:
Q  67 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacat--aatggacgagtgaagttttcaccggtcttta-ccaa 163  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||  ||| ||  | ||||  ||||||||||||||| ||||    
T  11951782 tgaaaccaaagaaatggtgagtcacaataattcaatgggagcatgacaaacaaagtggacatttaatagataaatgaaaatttcaccggtctttatccaa 11951683  T
Q  164 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgc 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  11951682 acaatttttaaactaaaaatttcatcctttggaaactcattcatgc 11951637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 2744109 - 2743968
Alignment:
Q  67 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 163  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  2744109 tgaaaccaaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 2744015  T
Q  164 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 210  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||||    
T  2744014 acaatttttaaactaaaagtttcatcatttgaaaactcattcatgct 2743968  T

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Target: scaffold0312 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 19133 - 18990
Alignment:
Q  67 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 165  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||   |||||  ||||||||||||||| ||||||    
T  19133 tgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggataggtgaaaatttcaccggtctttacccaaac 19034  T
Q  166 aatttttaaactaaaaatttcatcctttgtaaactcattcatgc 209  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  19033 aatttttaaactaaaaatttcatcatttggaaactcattcatgc 18990  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 411437 - 411580
Alignment:
Q  67 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtcttta-ccaaac 165  Q
    ||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||||||   |||||  ||||||||||||||| ||||||    
T  411437 tgaaaccaaagaaatggtgagtcacaataattcaatgagagcatgacaaacaaagtggacataatggataggtgaaaatttcaccggtctttacccaaac 411536  T
Q  166 aatttttaaactaaaaatttcatcctttgtaaactcattcatgc 209  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  411537 aatttttaaactaaaaatttcatcatttggaaactcattcatgc 411580  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 45227870 - 45227735
Alignment:
Q  73 caaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtgg-acataatggacgagtgaagttttcaccggtcttta-ccaaacaattt 170  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||||   ||||||  ||||||||||||||| |||||||||||    
T  45227870 caaagaaatggtgagtcacaagaattcaatgggagcatgacaaacaaagtggaaaataatgggtaagtgaaaatttcaccggtctttacccaaacaattt 45227771  T
Q  171 ttaaactaaaaatttcatcctttgtaaactcattca 206  Q
    ||||||||| |||||||||||| | || ||||||||    
T  45227770 ttaaactaacaatttcatccttcgaaagctcattca 45227735  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 29896665 - 29896808
Alignment:
Q  69 aaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatggacgagtgaagttttcaccggtctttaccaaacaa- 167  Q
    |||||||||||||| ||| ||||||||||||||||||| ||| |||||| |||||||||||||||| |||||| ||||||||||||||||| | ||| |     
T  29896665 aaatcaaagaaatgatgaatcacaagaattcaatgggagcatgacaaaccaagtggacataatggatgagtgatgttttcaccggtctttatccaaccat 29896764  T
Q  168 --tttttaaactaaaaatttcatcctttgtaaactcattcatgct 210  Q
      ||||||||||||||| ||||||||||  || ||||||||||||    
T  29896765 tttttttaaactaaaaa-ttcatccttttaaagctcattcatgct 29896808  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 26300141 - 26300227
Alignment:
Q  125 acataatggacgagtgaagttttcaccggtcttta-ccaaacaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 210  Q
    |||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26300141 acataatggatgagtgaagttttcatcggtcattatccaaacaatttttaaactaaaaatttcatcctttgaaaactcattcatgct 26300227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 29935224 - 29935083
Alignment:
Q  67 tgaaatcaaagaaatggtgagtcacaagaattcaatgggatcataacaaacaaagtggacataatgg--acgagtgaagttttcaccggtcttta-ccaa 163  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||  | |||||||  | | || ||||      ||||||||| ||||    
T  29935224 tgaaaccaaagaaatggtaagtcacaagaattcaatgggagcatgacaaacaaagtaaaaataatgggtatgggt-aagt----gacggtctttacccaa 29935130  T
Q  164 acaatttttaaactaaaaatttcatcctttgtaaactcattcatgct 210  Q
    |||||||||||||||||| ||||||| |||| || ||||||||||||    
T  29935129 acaatttttaaactaaaagtttcatcatttgaaagctcattcatgct 29935083  T

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