View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_high_8 (Length: 549)
Name: NF15789_high_8
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 9670522 - 9671063
Alignment:
| Q |
1 |
aacaaaccacctacaaagaattattcatgccactatgtgggtgtttagtaacccagtagctcaccgctacctcaaagtttaagaccattttcaccgcaat |
100 |
Q |
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||||||||||||||||||||||| ||||||| ||| |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9670522 |
aacaaaccacctacaaagaattactcatgccgctacgtgggtgtttggtaacctagtagctcaccgctacctcaa-gtttaagaccattttcaccgcaat |
9670620 |
T |
|
| Q |
101 |
ttcctaaagctccaattactagcttttatccaacctacggcagcaccacaactttttgaaatatccaaacacacactgcaacacagaccacaccaattag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9670621 |
ttcctaaagctccaattactagcttttatccaacctacggcagcaccgcaactttttgaaatatccaaacacacactgcaacacagaccacaccaattag |
9670720 |
T |
|
| Q |
201 |
gctaactcatagcaaccaaactaagnnnnnnnnnn--ttacaccaatcaagatactagcacacttctactattgtctgcaacaaagctacatgtgactct |
298 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9670721 |
gctaactcatagcaaccaagctaagaaaaataaaaaattacaccaatcaagatactagcacacttctactattgtctgcaacaaagctacatgtgacttt |
9670820 |
T |
|
| Q |
299 |
ctttttcttagaggaaaatataagtgactctcttaaacaaatggtttttctcgaccttctgtcttccctcttctttggggtgtcctcctcctatgtttta |
398 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9670821 |
ctttttcttagaggaaaatataagtgactctcttaaacaaatggtttttctcgaccttctgtcttccctcttctttagggtgtcctcctcctatgtttta |
9670920 |
T |
|
| Q |
399 |
aacatttaggccacatcacatatgtctgaagaagctacgtgcaatggaaatagtattgtctgctccaaaatgtgtgcatgctaaactggacaaataggcc |
498 |
Q |
| |
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| T |
9670921 |
aacatttaggccacatcacatatgtctgaagaagctacgtgcaagggaaatagtattgtctgctccaaaatgtgtgcatgctaaactggacaaataggcc |
9671020 |
T |
|
| Q |
499 |
aaaaggcagttccaattgtttgtcacagaagtattatctaccc |
541 |
Q |
| |
|
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| T |
9671021 |
aaaaggcagttccaattgtttgtcacagaagtaatatctaccc |
9671063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 13565248 - 13565112
Alignment:
| Q |
37 |
gtgggtgtttagtaacccagtagctcaccgctacctcaaagtttaagaccattttcaccgcaatttcctaaagctccaattactagcttttatccaacct |
136 |
Q |
| |
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|||||||||| | ||||| ||||||||| ||||||||| ||||| |||| ||| ||||||||||| |||||||| ||||| ||||||||||| |||| | |
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| T |
13565248 |
gtgggtgtttggcaacccggtagctcactgctacctcac-gtttaggaccttttgcaccgcaattttctaaagctacaattgctagcttttattcaacgt |
13565150 |
T |
|
| Q |
137 |
acggcagcaccacaac-tttttgaaatatccaaacacac |
174 |
Q |
| |
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|||||||||| ||| ||||||||||| |||||||||| |
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| T |
13565149 |
gcggcagcaccgtaacttttttgaaata-ccaaacacac |
13565112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 22366097 - 22366230
Alignment:
| Q |
37 |
gtgggtgtttagtaacccagtagctcaccgctacctcaaagtttaagaccattttcaccgcaatttcctaaagctccaattactagcttttatccaacct |
136 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
22366097 |
gtgggtgtttggtaacctagtagctcaccgctacctcaa-gtttaagaccattttaaccgcaatttcctaaagctccaattactaacttttatccaacgt |
22366195 |
T |
|
| Q |
137 |
acggcagcaccacaactttttgaaatatccaaaca |
171 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |
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| T |
22366196 |
acggcggcaccacaactttttgaaatatccaaaca |
22366230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 36580588 - 36580727
Alignment:
| Q |
37 |
gtgggtgtttagtaacccagtagctcaccgctacctcaaagtttaagaccattttcaccgcaatttcctaaagctccaattactagcttttatccaacct |
136 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
36580588 |
gtgggtgtttggtaacccagtagctcaccgctaccttaa-gtttaagaccattttcaccgcaatttcctaaagctccgattactagcttttatccaacgt |
36580686 |
T |
|
| Q |
137 |
acggcagcaccacaactttttgaaatatccaaacacacact |
177 |
Q |
| |
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| || ||||| ||||||||||||||||||||||||||||| |
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| T |
36580687 |
aaggtagcactgcaactttttgaaatatccaaacacacact |
36580727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 57 - 176
Target Start/End: Complemental strand, 29118402 - 29118289
Alignment:
| Q |
57 |
tagctcaccgctacctcaaagtttaagaccattttcaccgcaatttcctaaagctccaattactagcttttatccaacctacggcagcaccacaactttt |
156 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| || |||||||||||||||| ||||| |||||| ||||||| |
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| T |
29118402 |
tagctcaccgctacctcaa-gtttaagacccttttcaccgcaattttctaaagcacc-----ctagcttttatccaacgtacggtagcaccgtaactttt |
29118309 |
T |
|
| Q |
157 |
tgaaatatccaaacacacac |
176 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
29118308 |
tgaaatatccaaacacacac |
29118289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 50510834 - 50510882
Alignment:
| Q |
237 |
tacaccaatcaagatactagcacacttctactattgtctgcaacaaagc |
285 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||| |||||||||| |
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| T |
50510834 |
tacaccaatgaagatactagcacacttatactattgttggcaacaaagc |
50510882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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