View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15789_low_1 (Length: 1356)
Name: NF15789_low_1
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 765; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 18 - 1065
Target Start/End: Original strand, 39444264 - 39445292
Alignment:
| Q |
18 |
catcagttaaaagacatcttatactttccctcgaaagagttaatgaataatcaaacttccgcaaaaatagatttgtttggtaatgttttcttttgcataa |
117 |
Q |
| |
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|||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
39444264 |
catcagttaaaaaatatcttaaactttccctcgaaagagttaacgaataatcaaacttccgctaaaatagatttgtttggtattgttttcttttgcataa |
39444363 |
T |
|
| Q |
118 |
gcttatagtcttttaatactaataccttaaaagcgnnnnnnn-aagctacatcaagtgaatcatggaagactgtgtgtttggactacatcaagtgaatct |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
39444364 |
gcttatagtcttttaatactactaccttaaaagcgttttttgtaagctacatcaagtgaatcatggaagattgtgtgtttggactacatcaagtgaatct |
39444463 |
T |
|
| Q |
217 |
tctcttatctttgctgtatgagcaattctagggatatttttatttagtccactcttaaaatggatttagcaagttgtatattttaacaagcaatgatgtc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
39444464 |
tctcttatctttgctgtatgagcaattctaggaatatttttatttagtccactcttaaaatggatttagcaagttgtatattttaacaagcgatgatgtc |
39444563 |
T |
|
| Q |
317 |
ttccacttataaacacatttccattatactttgcatagtgcaaattcaaactggagaagacaannnnnnnnnnnnnnnncaaattagctgctatgtttac |
416 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
39444564 |
ttccactt-----cacatttccattatactttgcatagtgcaaattcaaactagagaagacaattattttttcctttttcaaattagctgctatgtttac |
39444658 |
T |
|
| Q |
417 |
tatt-aaacttctgatttacgtgggaattttcttttaaactcagcacacaagggagcacacaattcgcggcacaaagaagcatatcttaagagaagatta |
515 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||| |
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|
| T |
39444659 |
tatttaaacttctgatttacgtgggatttttcttttaaactcagc----------gcacacaattcgcagcacaaagaagcatagctta-gagaagatta |
39444747 |
T |
|
| Q |
516 |
tgaggaaaactagttattaattataaactcgcacaactgttcatgcatcttgaaagtcctcctaccaatagtatattgaattttgtatcttgaaacttgc |
615 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
39444748 |
tgaggaaaacgagttatta----taaactcgcacaactgttgatgcatcttgaaagtcctcctaccaatagtatattgaattttgcatcttgaaacttgc |
39444843 |
T |
|
| Q |
616 |
tcatatataatcttttgatttgatgcacaattcaggatcggatgttcaggtttttctctctctcattactttagatctggtattcttcctaaaaggaaag |
715 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
39444844 |
tcatatataatcttttgatttgatgcacaattcaggatcggatgttcaggttttt-tctctctcattactttagatctggtcttcttcctaaaaggaaag |
39444942 |
T |
|
| Q |
716 |
gctctttctatattcatagagattttatcatgaatttccccagggccatgttgaattaacaaaccagggccatctaattcaatgtgtgatagtgaacggg |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39444943 |
gctctttctatattcatagagattttatcatgaatttccccagggccatgttgaattaacaaaccagggccatctaattcaatgtgtgatagtgaacggg |
39445042 |
T |
|
| Q |
816 |
ataaacgtaattagaggtgtaagttagggaacagaaaaatcataattgcacatgtatccttttaatcatgttttgaagatgaatagggaaattgattttg |
915 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39445043 |
ataaacgtaattggaggtgtaagttagggaacagaaaaatcataattgcacatgtagccttttaatcatgttttgaagatgaatagggaaattgattttg |
39445142 |
T |
|
| Q |
916 |
gcgtattagggcttcttataacaatacttttttgattttgaagttttgttagctgtggcattacatccattgttgttgccgcaaagagtgatgaaaccaa |
1015 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39445143 |
gcggattagggcttcttataacaatactttttttattttgaaattttgttagcagtggcattacatccattgttgttgccgcaaagagtgatgaaaccaa |
39445242 |
T |
|
| Q |
1016 |
atacatctgctaaagaaaaatttcaagaaaattatatcatcaacattttt |
1065 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39445243 |
atacagcacctaaagaaaaatttcaagaaaattatattatcaacattttt |
39445292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 1060 - 1338
Target Start/End: Original strand, 39446083 - 39446352
Alignment:
| Q |
1060 |
atttttctatatactggaggattgaattaaattaaatagaacttgacattggaaataaatctaacaaacatttgctaaggagagattttttattattann |
1159 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || | |
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|
| T |
39446083 |
atttttctatatattggaggattgaattaaattaaatagaacttgacattggaaataaatctaacaaacatttgttaaggagagattttttttttct--- |
39446179 |
T |
|
| Q |
1160 |
nnnnnnnnnngtatttaccctctagtttcaacgagaagggctctcgtaatcctgaattcggttgggagataagtaaaatttgaccaaaaaatatttcact |
1259 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| |||| ||||||| |
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|
| T |
39446180 |
------ttttgtatttaccctctggtttcaacgagaagggctctcgtaatcctgaattcggttgggagagaaataaaatttggccaacaaatgtttcact |
39446273 |
T |
|
| Q |
1260 |
taagaattgaacccaagttctcctaaaaaattcgttattggtggagttcatcaacaattgagctcaaatgtttggttat |
1338 |
Q |
| |
|
| ||||| ||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
39446274 |
ttagaatcgaatccaaattctcctaaaaaatttgttatcggtggagttcatcaacaattgaggtcaaatgtttggttat |
39446352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 5e-75
Query Start/End: Original strand, 81 - 378
Target Start/End: Original strand, 39466745 - 39467023
Alignment:
| Q |
81 |
aaaatagatttgtttggtaatgttttcttttgcataagcttatagtcttttaatactaataccttaaaagcgnnnnnnn-----aagctacatcaagtga |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
39466745 |
aaaatagatttgtttggtaatgttttcttttgcataagcttatagtcttttaatactactaccttaaaagcgttttttttttataagctacatcaagtga |
39466844 |
T |
|
| Q |
176 |
atcatggaagactgtgtgtttggactacatcaagtgaatcttctcttatctttgctgtatgagcaattctagggatatttttatttagtccactcttaaa |
275 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39466845 |
atcatggaagattgtgtgtttggactacatcaagtgaatcttctcttatctttgctgtatgagcaattccagggatatttttattta------------- |
39466931 |
T |
|
| Q |
276 |
atggatttagcaagttgtatattttaacaagcaatgatgtcttccacttataaacacatttccattatactttgcatagtgcaaattcaaactggagaag |
375 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||| | ||||| |||||| |
|
|
| T |
39466932 |
---------gcaagttgtatattttaacaagcgatgatgtctt--acatataaacacatttccattatactttgtatagtgcaaactaaaactagagaag |
39467020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 396 - 581
Target Start/End: Original strand, 39467193 - 39467362
Alignment:
| Q |
396 |
caaattagctgctatgtttactatt-aaacttctgatttacgtgggaattttcttttaaactcagcacacaagggagcacacaattcgcggcacaaagaa |
494 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
39467193 |
caaattagctgctatgtttactatttaaacttctgatttacgtgggaattttcttttaaactcagcacacaa------------ttcgcggcacaaagaa |
39467280 |
T |
|
| Q |
495 |
gcatatcttaagagaagattatgaggaaaactagttattaattataaactcgcacaactgttcatgcatcttgaaagtcctcctacc |
581 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39467281 |
gcataactta-gagaagattatgaggaaaacaagttatta----taaactcgcacaactgttcatgaatcttgaaagtcctcctacc |
39467362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 39466658 - 39466719
Alignment:
| Q |
18 |
catcagttaaaagacatcttatactttccctcgaaagagttaatgaataatcaaacttccgc |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39466658 |
catcagttaaaagacatcttatactttccctcgaaagagttaatgaataatcaaacttccgc |
39466719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1279 - 1338
Target Start/End: Original strand, 39467630 - 39467689
Alignment:
| Q |
1279 |
ctcctaaaaaattcgttattggtggagttcatcaacaattgagctcaaatgtttggttat |
1338 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
39467630 |
ctcctaaaaaaatcgtccttggtggagttcatcaacaattaatctcaaatgtttggttat |
39467689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 983 - 1142
Target Start/End: Original strand, 35314772 - 35314931
Alignment:
| Q |
983 |
cattgttgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacatttttctatatactggaggatt |
1082 |
Q |
| |
|
|||| |||||||| || ||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||| || ||| | ||| ||| |
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|
| T |
35314772 |
cattattgttgccacatagagtgatgaaactaaatacagctgctaaagaaaaattcaaagaaaattatattatcaacattttt-taaatattagagaatt |
35314870 |
T |
|
| Q |
1083 |
ga-attaaattaaatagaacttgacattggaaataaatctaacaaacatttgctaaggaga |
1142 |
Q |
| |
|
|| |||||||||||||||| || ||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
35314871 |
gatattaaattaaatagaattttacattggcgataaatctaacaaacatttattaaggaga |
35314931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 885 - 1133
Target Start/End: Original strand, 35315621 - 35315858
Alignment:
| Q |
885 |
gttttgaagatgaatagggaaattgattttggcgtattagggcttcttataacaatacttttttgattttgaagttttgttagctgtggcattacatcca |
984 |
Q |
| |
|
||||| ||||| |||||||| ||| ||||||| | |||||| ||||||||||||| ||| || || |||||| |||||||||| | ||| ||| || |
|
|
| T |
35315621 |
gtttttaagataaatagggagattcattttggagggttagggtttcttataacaatgcttgttcgactttgaaattttgttagcaccgatattgcatgca |
35315720 |
T |
|
| Q |
985 |
ttgttgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacatttttctatatactggaggattga |
1084 |
Q |
| |
|
|||||||||| | ||||| | |||||||||||| | ||||||||||||| ||||| |||||||||||| || ||| ||||||||||| |
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|
| T |
35315721 |
ttgttgttgctactaagagcggtgaaaccaaatatagttgctaaagaaaaa------------tatattatcaacatttttttaaatattggaggattga |
35315808 |
T |
|
| Q |
1085 |
-attaaattaaatagaacttgacattggaaataaatctaacaaacatttg |
1133 |
Q |
| |
|
|||||||||||||||| |||||| | ||||| ||| ||||||||||| |
|
|
| T |
35315809 |
tattaaattaaatagaatttgacactaacaataactcttacaaacatttg |
35315858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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