View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_11 (Length: 534)
Name: NF15789_low_11
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 442
Target Start/End: Original strand, 24998048 - 24998480
Alignment:
| Q |
17 |
aatctatctctctttctctctacccgtttcttttctgttttcaatcccctgagagtctaccatgtaatgcgtacccttaactatttaaacatttaaccat |
116 |
Q |
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| T |
24998048 |
aatctatttctctttctctctacccgtttcttttctgttttcaatcccctgatagtctaccatgtaatgcgcacccttaactatttaaacatttaaccat |
24998147 |
T |
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| Q |
117 |
ggtccttaactatggtttaaggaccatggttaaattgtttttcttgagggagcagcattacatggtggactctcagtgagattgaaaacaagaaagaaac |
216 |
Q |
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| T |
24998148 |
ggtccttaactatggttcaaggaccatggttaaattgtttttctcgagggagcagcattacatggtggactctcagtgagattgaaaacagaaaagaaac |
24998247 |
T |
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| Q |
217 |
gggtagggagggagattagtgtggtagataagggtgcgttcactgcacatacatgaaccggcgagactcaagcatgagaacaaatgacgcttacacaatg |
316 |
Q |
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| T |
24998248 |
gggtagggagggagattagtgtggtagataagggtgcattcactacacatacatgaaccggcgagactcaagcatgaaaacaaatgacgctcacgcaatg |
24998347 |
T |
|
| Q |
317 |
gaaattggcatcaccgttgccctaaataattctg-----gnnnnnnnnnncttatgaatta--ttttgtgttgaaattttattgatttattcaatccagt |
409 |
Q |
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| T |
24998348 |
gaaattggcatcaccgttgccctcgaaaattctgttttttttttctttttcttatgaattattttttgtgttgaaattttattgatttattcaatccagt |
24998447 |
T |
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| Q |
410 |
tttcattatgattaatcgatttttgtcatgtct |
442 |
Q |
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| T |
24998448 |
tttcattatgattaatcaaattttgtcatgtct |
24998480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 479 - 527
Target Start/End: Original strand, 24998519 - 24998567
Alignment:
| Q |
479 |
caatgcaaatatggttagtgttataggttttacagtttaatgttctctg |
527 |
Q |
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| T |
24998519 |
caatgcaaatatggttagtgttataggttttacagtttaatgttctctg |
24998567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 24998253 - 24998202
Alignment:
| Q |
36 |
ctacccgtttcttttctgttttcaatc-ccctgagagtctaccatgtaatgc |
86 |
Q |
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| T |
24998253 |
ctacccgtttcttttctgttttcaatctcactgagagtccaccatgtaatgc |
24998202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 24998052 - 24998006
Alignment:
| Q |
229 |
agattagtgtggtagataagggtgcgttcactgcacatacatgaacc |
275 |
Q |
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| T |
24998052 |
agattagtgtggtggataagggtgcgctcactgtacatacatgaacc |
24998006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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