View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_16 (Length: 465)
Name: NF15789_low_16
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 435
Target Start/End: Complemental strand, 32217454 - 32217032
Alignment:
| Q |
13 |
attaatgttacccatgaaatttgtttaaatgtgtagatacgtgtgaatggacaagatacagcacctgtgtataaatacctgaaatcacaaaaatgtggaa |
112 |
Q |
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| T |
32217454 |
attaatgttacacatgaaatatgtttaaatgtgtagatacgtgtgaatggacaagatacagcacctgtgtataaatacctgaaatcacaaaaatgtggaa |
32217355 |
T |
|
| Q |
113 |
gtttgggatcaagaaggatcaagtggaattttacaaagtttttagttgatgaggaaggccgtgtcatccaacgttatagtccaaccactcaaccattagc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32217354 |
gtttgggatcaagaaggatcaagtggaattttacaaagtttttagttgatgaggaaggccgtgtcatccaacgttatagtccaaccacccaaccattagc |
32217255 |
T |
|
| Q |
213 |
cattgaagtactttttctttctctctctgaaattgctttgtatacatatttctttatctatgcatatttatatatctttgagaggttaaattaatttgca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32217254 |
cattgaagtactttttctttctctctctgaaattgctttgtatacatatttcattatctatgcatatttatatatctttgagaggttaaattattttgca |
32217155 |
T |
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| Q |
313 |
ttttcacatatctttgacagaatgatatcaagaaagcactgagagtggctaattgagagactctacaactatttcagttcaggccattgctggtgtgctg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32217154 |
ttttcacatatctttgacagaatgatatcaagaaagcactgagagtggctaattgagagactctacaactatttcagttcaggccattgctggtgtgctg |
32217055 |
T |
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| Q |
413 |
aagatatatcttataatacctcc |
435 |
Q |
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||||||||||||||||||||||| |
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| T |
32217054 |
aagatatatcttataatacctcc |
32217032 |
T |
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