View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_17 (Length: 456)
Name: NF15789_low_17
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 13137986 - 13138414
Alignment:
| Q |
18 |
atatgtaactcttcatttccagtccttacaagatatgtggtccatcctcaatgcaaagttgtgattactgcaactatgatcaacatcatcaactcagttt |
117 |
Q |
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| T |
13137986 |
atatgtaactcttcatttccaattcttacaagatatgtggtccatcctcaatgcaaagttgtgattactgcaactatgatcaacatcatcaactcagttt |
13138085 |
T |
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| Q |
118 |
ggtttgcaaaaaatcaaatgagatttagaaacaagaaaattcattgaaaaagttctcttgccacattgatatctaatacaactctttagggaagaattgt |
217 |
Q |
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| T |
13138086 |
ggtttgcaagaaatcaaatgagatttagaaacaagaaaattcattgaaaaagttctcttgccacattgatatctaatacaactctttagggaagaattgt |
13138185 |
T |
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| Q |
218 |
atgcacattgtatcatcaatgtactttctggctacccatgtgtttagggaattaggaaacagttgtgctgacactttagctaacttaggcttatccctta |
317 |
Q |
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| T |
13138186 |
atgcacattgtatcatcagtgtactttctggctacccatgtgtttagggaattaggaaacagttgtgctgacactttagctaacttaggcttatccctta |
13138285 |
T |
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| Q |
318 |
atcatcttatggtctggttaagtgctcctaattgtattaaagcatccttatagctaaaaataaatcaggaatgtgtgagtttgtttgttaaattctaagg |
417 |
Q |
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| T |
13138286 |
atcatcttatggtctggttaagtgctcctaattgtattaaagcatccttatagctaaaaataaatcaagaatgtgtgagtttgtttgttaaattctaagg |
13138385 |
T |
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| Q |
418 |
aggttttggctttatatccccctcctttg |
446 |
Q |
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| T |
13138386 |
aggttttggctttatctccccctcctttg |
13138414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 16472677 - 16472632
Alignment:
| Q |
401 |
tttgttaaattctaaggaggttttggctttatatccccctcctttg |
446 |
Q |
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| T |
16472677 |
tttgttaatttctaaggaggttttggcttgatgtccccctcctttg |
16472632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 16473416 - 16473353
Alignment:
| Q |
61 |
atcctcaatgcaaagttgtgattactgcaactatgatcaacatcatcaactcagtttggtttgc |
124 |
Q |
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| T |
16473416 |
atcctcaatgtagagttgtgatcactgcagccatgataaacattatcaaatcagtttggtttgc |
16473353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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