View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_low_21 (Length: 402)

Name: NF15789_low_21
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_low_21
NF15789_low_21
[»] chr7 (5 HSPs)
chr7 (21-131)||(16157174-16157284)
chr7 (21-131)||(21368462-21368572)
chr7 (24-125)||(22707516-22707614)
chr7 (203-294)||(44356652-44356743)
chr7 (127-164)||(21369457-21369494)
[»] chr3 (6 HSPs)
chr3 (21-131)||(33757787-33757897)
chr3 (21-124)||(13179704-13179807)
chr3 (21-124)||(13184362-13184465)
chr3 (127-164)||(13180726-13180763)
chr3 (127-164)||(13185260-13185297)
chr3 (127-164)||(33758804-33758841)
[»] chr2 (3 HSPs)
chr2 (21-131)||(21465086-21465196)
chr2 (21-131)||(44794571-44794681)
chr2 (21-131)||(44794894-44795004)
[»] scaffold0359 (1 HSPs)
scaffold0359 (21-131)||(8584-8694)
[»] scaffold0003 (1 HSPs)
scaffold0003 (21-131)||(289110-289220)
[»] chr8 (5 HSPs)
chr8 (21-131)||(18774121-18774231)
chr8 (21-131)||(16417373-16417483)
chr8 (37-131)||(17459690-17459784)
chr8 (203-294)||(20135328-20135419)
chr8 (127-164)||(18775140-18775177)
[»] chr6 (4 HSPs)
chr6 (21-131)||(21299213-21299323)
chr6 (24-131)||(9344249-9344353)
chr6 (127-164)||(12638793-12638830)
chr6 (127-164)||(21302617-21302654)
[»] chr4 (4 HSPs)
chr4 (21-131)||(11475790-11475900)
chr4 (127-164)||(34454924-34454961)
chr4 (24-112)||(34455906-34455994)
chr4 (127-164)||(11474846-11474883)
[»] chr1 (2 HSPs)
chr1 (21-131)||(37260555-37260665)
chr1 (127-155)||(37259621-37259649)
[»] scaffold0671 (2 HSPs)
scaffold0671 (21-131)||(2272-2382)
scaffold0671 (127-155)||(1227-1255)
[»] scaffold0065 (1 HSPs)
scaffold0065 (21-131)||(33597-33707)
[»] chr5 (2 HSPs)
chr5 (21-131)||(22821114-22821224)
chr5 (127-164)||(22825867-22825904)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-124)||(127181-127284)
[»] scaffold0512 (1 HSPs)
scaffold0512 (127-164)||(4-41)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 16157284 - 16157174
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||| |||||||    
T  16157284 taaaggcacaaaacactagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaatgaaaattatgtattgggattaattttgacaatga 16157185  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  16157184 tttgagttgaa 16157174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 21368462 - 21368572
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||| |||||||    
T  21368462 taaaggcacaaaacacaggaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatga 21368561  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  21368562 tttgagttgaa 21368572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 22707516 - 22707614
Alignment:
Q  24 aggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgattt 123  Q
    ||||||||||| ||||||||| | | ||||||||||||    || |||||||||||||||||  ||||||||||||||||||| ||||| | ||||||||    
T  22707516 aggcacaaaacacaagaaatggaatgaaaatattgttat---aatgatgtgccaaaaggaaaagaaaattatgtattgggattaattttgataatgattt 22707612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 294
Target Start/End: Complemental strand, 44356743 - 44356652
Alignment:
Q  203 gggcctggttgtgagcttacggagtccccgttcatgcttggaatgaagtgtttttcaggttgtgtgtgaagggagttggacggtttattcat 294  Q
    |||| |||||| ||| |||||| || ||| | |||||||||||||| |  || |||||| ||||||||||  | ||||||||||||||||||    
T  44356743 gggcttggttgcgagtttacggtgttcccatacatgcttggaatgatgatttcttcaggatgtgtgtgaatcgtgttggacggtttattcat 44356652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 21369457 - 21369494
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    |||||||||||||||||||||||||||||  |||||||    
T  21369457 ttgaattgaagcacttgtgtcatggacaaccatgccct 21369494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 33757787 - 33757897
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||| ||||||     
T  33757787 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatgg 33757886  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  33757887 tttgagttgaa 33757897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 13179704 - 13179807
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  13179704 taaaagcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 13179803  T
Q  121 tttg 124  Q
    ||||    
T  13179804 tttg 13179807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 13184362 - 13184465
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  13184362 taaaagcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 13184461  T
Q  121 tttg 124  Q
    ||||    
T  13184462 tttg 13184465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 13180726 - 13180763
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    |||||||||||||||||||||||||||||  |||||||    
T  13180726 ttgaattgaagcacttgtgtcatggacaaccatgccct 13180763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 13185260 - 13185297
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    |||||||||||||||||||||||||||||  |||||||    
T  13185260 ttgaattgaagcacttgtgtcatggacaaccatgccct 13185297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 33758804 - 33758841
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    |||||||||||||||||||||||||||||  |||||||    
T  33758804 ttgaattgaagcacttgtgtcatggacaaccatgccct 33758841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 21465086 - 21465196
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||||||||||| ||||| |||||||    
T  21465086 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatga 21465185  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  21465186 tttgagttgaa 21465196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 44794571 - 44794681
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  44794571 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 44794670  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  44794671 tttgagttgaa 44794681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 44795004 - 44794894
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  44795004 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 44794905  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  44794904 tttgagttgaa 44794894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 8584 - 8694
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  8584 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 8683  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  8684 tttgagttgaa 8694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 289220 - 289110
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||||||||||| ||||| |||||||    
T  289220 taaaggctcaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatga 289121  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  289120 tttgagttgaa 289110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 18774121 - 18774231
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  18774121 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 18774220  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  18774221 tttgagttgaa 18774231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 16417373 - 16417483
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||||| |||| ||||| |||||||    
T  16417373 taaaggcgcaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgagattaattttgacaatga 16417472  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  16417473 tttgagttgaa 16417483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 17459690 - 17459784
Alignment:
Q  37 aagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgatttgagttgaa 131  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||    
T  17459690 aagaaatgatctaaaattattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttgacaatgatttgagttgaa 17459784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 20135328 - 20135419
Alignment:
Q  203 gggcctggttgtgagcttacggagtccccgttcatgcttggaatgaagtgtttttcaggttgtgtgtgaagggagttggacggtttattcat 294  Q
    |||| |||||| ||| |||||| || ||| | |||||||||||||| |  || |||||| ||||||||||  | ||||||||||||||||||    
T  20135328 gggcttggttgcgagtttacggtgttcccatacatgcttggaatgatgatttcttcaggatgtgtgtgaatcgtgttggacggtttattcat 20135419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 18775140 - 18775177
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    |||||||||||||||||||||||||||||  |||||||    
T  18775140 ttgaattgaagcacttgtgtcatggacaaccatgccct 18775177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 21299213 - 21299323
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  21299213 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 21299312  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  21299313 tttgagttgaa 21299323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 9344353 - 9344249
Alignment:
Q  24 aggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatgattt 123  Q
    |||||||||||  || ||||| || || |||||| |||||||| | |||||||||||| |||  ||||||||||||| ||||| ||||| || |||||||    
T  9344353 aggcacaaaacaaaataaatggacaaataatatt-ttaatgaatg-atgtgccaaaag-aaacgaaaattatgtattaggattgattttgacgatgattt 9344257  T
Q  124 gagttgaa 131  Q
    ||||||||    
T  9344256 gagttgaa 9344249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 12638830 - 12638793
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    |||||||||||||||||||||||||||||  |||||||    
T  12638830 ttgaattgaagcacttgtgtcatggacaaccatgccct 12638793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 21302617 - 21302654
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    |||||||||||||||||||||||||||||  |||||||    
T  21302617 ttgaattgaagcacttgtgtcatggacaaccatgccct 21302654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 11475900 - 11475790
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||||||||||| ||||| |||||||    
T  11475900 taaaggcacaaaacttaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatga 11475801  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  11475800 tttgagttgaa 11475790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 34454961 - 34454924
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34454961 ttgaattgaagcacttgtgtcatggacaattatgccct 34454924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 34455994 - 34455906
Alignment:
Q  24 aggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaa-ataaaaattatgtattgggatttatttt 112  Q
    |||||||||||  |||||||  ||| |||||||||| ||||||| |||||| ||||||||| || |||||||| |||||||||| |||||    
T  34455994 aggcacaaaacataagaaatagactgaaaatattgtgaatgaaatgatgtg-caaaaggaacatgaaaattatatattgggattaatttt 34455906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 11474883 - 11474846
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    |||||||||||||||||||||||||||||  |||||||    
T  11474883 ttgaattgaagcacttgtgtcatggacaaccatgccct 11474846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 37260665 - 37260555
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||  ||||||||||||||||||| ||||| |||||||    
T  37260665 taaaggcacaaaacacaagaaatgaactaaaaatattgtcaatgaaagggtgtgccaaaaagaaacgaaaattatgtattgggattaattttgacaatga 37260566  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  37260565 tttgagttgaa 37260555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 37259649 - 37259621
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaa 155  Q
    |||||||||||||||||||||||||||||    
T  37259649 ttgaattgaagcacttgtgtcatggacaa 37259621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 2382 - 2272
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||| ||||  ||||| ||||||||||||| ||||| |||||||    
T  2382 taaaggcacaaaacacaagaaatgaactaaaaatattgttaatgaaaaggtgtgccaaaaagaaacgaaaatcatgtattgggattaattttgacaatga 2283  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  2282 tttgagttgaa 2272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 1255 - 1227
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaa 155  Q
    |||||||||||||||||||||||||||||    
T  1255 ttgaattgaagcacttgtgtcatggacaa 1227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 33597 - 33707
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||  ||||||||| |||||||||  |||| |||||||    
T  33597 taaaggcacaaaacacaagaaatgaactaaaattattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgcattgggattatttttgacaatga 33696  T
Q  121 tttgagttgaa 131  Q
    |||||||||||    
T  33697 tttgagttgaa 33707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 22821114 - 22821224
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||| |||||  ||||||    
T  22821114 taaaggtacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaaaaggaaacgaaaattatgtattgggattaattttggcaatga 22821213  T
Q  121 tttgagttgaa 131  Q
     ||||||||||    
T  22821214 attgagttgaa 22821224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 22825867 - 22825904
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    |||||||||||||||||||||||||||||  |||||||    
T  22825867 ttgaattgaagcacttgtgtcatggacaaccatgccct 22825904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 127284 - 127181
Alignment:
Q  21 taaaggcacaaaacgcaagaaatgaactaaaaatattgttaatgaaaggatgtgccaaaaggaaataaaaattatgtattgggatttattttaacaatga 120  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||  ||||||||||||||||||| ||||| |||||||    
T  127284 taaaagcacaaaacacaagaaatgaactaaaaatattgttaatgaaagggtgtgccaacaagaaacgaaaattatgtattgggattaattttgacaatga 127185  T
Q  121 tttg 124  Q
    ||||    
T  127184 tttg 127181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 4 - 41
Alignment:
Q  127 ttgaattgaagcacttgtgtcatggacaattatgccct 164  Q
    |||||||||||||||||||||||||||||  |||||||    
T  4 ttgaattgaagcacttgtgtcatggacaaccatgccct 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University