View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15789_low_22 (Length: 398)
Name: NF15789_low_22
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 25772195 - 25771826
Alignment:
| Q |
18 |
aagttcactatagggagggcaaccaagttgccaatgctctggctatggacaaagcctacctccttttgcctcacagtggtgggattccccatgtctccct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25772195 |
aagttcactatagggagggcaaccaagttgccaatgctcaggctatggacaaagcgtacctccttttgcctcaaagtggtgggattccccatgtctccct |
25772096 |
T |
|
| Q |
118 |
ctttaacaattattcacctttaacaccaaagtgcaatgatccgatatatctcgcggaggcacccacaacacttaattcccctaataattagttcattctt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25772095 |
ctttaacaattattcacctttaacaccaaagaacaatgatccgatatatctcgcggaggcacccacaacacttaattcccctaataattaattcattctt |
25771996 |
T |
|
| Q |
218 |
ccgcgaaacaagaattctatcaatccaactgatttcacgatcatttgaatgataccatgtgaacctcctcccaatcggactaacatcctcaagcttcaat |
317 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25771995 |
c--cgaaacaagaattctatcaatccaactcatttcatgatcatttgaatgataccatgtgaacctcctcccaatcggactaacatcctcaagctccaat |
25771898 |
T |
|
| Q |
318 |
tgtctcaataaaatagtaaaaagattcatttccaaaatatgagctgaggacatttcctcatcaacccccctt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25771897 |
tgtctcaataaaatagtaaaaagattcatttccaaaatatgagctgaggacatttcctcttcaacccccctt |
25771826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University