View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_23 (Length: 391)
Name: NF15789_low_23
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 8509408 - 8509772
Alignment:
| Q |
17 |
cacatccaatttcagttacttacattttaggtcacatgttaagtgagtgagataggaaagaagcaaaactaatgcatgaaaa-aatttggtggctaattt |
115 |
Q |
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| T |
8509408 |
cacatccaatttcagttacttacattttaggtcacatgttaagtgagtgagataggaaagaagcaaaactaatgcatgaaaaaaatttggtggctaattt |
8509507 |
T |
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| Q |
116 |
tcatacttttcccttaacttgatgatggccacttctcaaaatgctttgtttatttggagggattattcttcaagtcaattaacttcttagagggaaaaag |
215 |
Q |
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| T |
8509508 |
tcatacttttcccttaacatgatgatggccacttctcaaaatgctttgtttatttggagggattattcttcaagtcaattaacttcttagagggaaaaag |
8509607 |
T |
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| Q |
216 |
aaagagaatctagcttaccttgaattgtaattgaaagggatgtgacataaaatatatagcatgcataattaataaacttataaaagtatgtatacataca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8509608 |
aaagagaatctagcttaccttgaattgtaattgaaagggatgtgacataaaatatatagcatgcataattaataaacttataaaagtatgtatacataca |
8509707 |
T |
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| Q |
316 |
tgtgaagtttgctagtgcatttcgtaatgcaataaaattttgcacttttaggataacctattcat |
380 |
Q |
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| T |
8509708 |
tgtgaagtttgctagtgcatttcgtaatgcaataaaattttgcacttttaggataacctattcat |
8509772 |
T |
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