View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_26 (Length: 389)
Name: NF15789_low_26
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 196 - 372
Target Start/End: Complemental strand, 28123602 - 28123425
Alignment:
| Q |
196 |
aagggttttgaagaatttacaaatgcttctaatctattctgaaatttaacttcactggtctttaataacaatggaagaggaaaacgcacacccatttcta |
295 |
Q |
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| T |
28123602 |
aagggtgttgaagaatttacaaatgcttctaatctattctgaaatgtaacttcactagtctttaataacaaaggaagtggaaaacacacacccatttcta |
28123503 |
T |
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| Q |
296 |
cacaccgtttatgtctaggcttaatcctattctctaagctaaatgagaaataatg-tgcaattctttcacctccttca |
372 |
Q |
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| T |
28123502 |
cacaccgtttatgtctaggcttaatcctattctctaagctaaatgagaaataatgaggaaattctttcacctccttca |
28123425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 28156291 - 28156212
Alignment:
| Q |
196 |
aagggttttgaagaatttacaaatgcttctaatctattctgaaatttaacttcactggtctttaataacaatggaagagg |
275 |
Q |
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| T |
28156291 |
aagggtgttgaacaatttacaaatgcttctaatctattctaaaatgtaacttcattagtctttaataacaaaggaagagg |
28156212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 28156214 - 28156159
Alignment:
| Q |
312 |
aggcttaatcctattctctaagctaaatgagaaataatgt-gcaattctttcacct |
366 |
Q |
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| T |
28156214 |
aggcttaatcctattctctaagctaaatgagaaataatgtggaaattctttcacct |
28156159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 28156865 - 28156810
Alignment:
| Q |
127 |
atatgtgtgtatcaatatatgtatagtgatttcatttggtttatatccactgaact |
182 |
Q |
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| T |
28156865 |
atatgtgtgcatcaatacatgttttgtgatttcatttggtttatatctattgaact |
28156810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 28173416 - 28173378
Alignment:
| Q |
335 |
taaatgagaaataatgtgc-aattctttcacctccttca |
372 |
Q |
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| T |
28173416 |
taaatgagaaataatgtgcaaattctttcacctccttca |
28173378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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