View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_27 (Length: 388)
Name: NF15789_low_27
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 5461181 - 5461220
Alignment:
| Q |
241 |
atgtgattacattcaattaatttattattccaaattatta |
280 |
Q |
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| T |
5461181 |
atgtgattacattcaattaatttattatctcaaattatta |
5461220 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 14782794 - 14782826
Alignment:
| Q |
194 |
atctctgtagcaccgacacttctgattgaaagc |
226 |
Q |
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| T |
14782794 |
atctctgtagcaccgacacttctgatggaaagc |
14782826 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 33598507 - 33598479
Alignment:
| Q |
196 |
ctctgtagcaccgacacttctgattgaaa |
224 |
Q |
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| T |
33598507 |
ctctgtagcaccgacacttctgattgaaa |
33598479 |
T |
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