View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_28 (Length: 382)
Name: NF15789_low_28
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 18512383 - 18512743
Alignment:
| Q |
7 |
tgagatgaatacctcctaatcaaccacaacattccttacaatatctttgcatgctctccttttgtaaatatgctaatctttgcatccactcgcgtggacc |
106 |
Q |
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| T |
18512383 |
tgagatgaatacctcctaatccacaacaacattccttacaatatctttgcatgctctccttttgtaaatatgctaatctttgcatccagtcgcgtggacc |
18512482 |
T |
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| Q |
107 |
acatttaaaataagctcattgctcactaaaattgacattgggagaaaattgaatttgagatcttgaaaaagg-catactccgatattacaagtcaacaac |
205 |
Q |
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| T |
18512483 |
acatttaaaataagctcattgctcattaaaattgacattgggagaaaattgaatttgagatcttgaaaaagggcacactccaatattacaagtcaacaac |
18512582 |
T |
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| Q |
206 |
actagaccgacacaagtgggttattcatcgtctcacttaacactctttagagtagttaaggaacggacgatggatgaacaaagttcctttcttggcgtaa |
305 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18512583 |
accagaccgacacaagtgggttattcatcgtctcacctaacactctttagagtagttaaggaacggacgatggaggaacaaagttcctttcttggcgtaa |
18512682 |
T |
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| Q |
306 |
ttatttgaagcaaaatgaaatcacggttgagagctattagccgaaccctcggataactttt |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18512683 |
ttatttgaagcaaaatgaaatcacggttgagagctattagccgaaccctcggataactttt |
18512743 |
T |
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