View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_29 (Length: 376)
Name: NF15789_low_29
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 211 - 372
Target Start/End: Complemental strand, 25255959 - 25255812
Alignment:
| Q |
211 |
cagtaagttataatactctctcaaaccatgcacatttaatttttacctggtctagactaggtttttcagcttatttccttaagtgctctaggataacaga |
310 |
Q |
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| T |
25255959 |
cagtaagttataatactctctcaaaccatgcacatttaatttttacctggtctag--------------cttatttccttaagtgctctaggataacaga |
25255874 |
T |
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| Q |
311 |
tgaaaacagcttatagggaaagagtttggctttattttatcttgtattatagaattatctac |
372 |
Q |
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| T |
25255873 |
tgaaaacagcttatagggaaagagtttggctttattttatcttgtattatagaattagctac |
25255812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 25256148 - 25256019
Alignment:
| Q |
18 |
agatacgcttactaatttaggaaaatcaaaatgattgaatataattatatgtctcggtgccggattctaacactgatatgtgttagacaccaaagacacc |
117 |
Q |
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| T |
25256148 |
agatacacttactaatttaggaaaatcaaaatgattgaatataattatatgtttcggtgccggattctaacactcatatgtgtcagacaccaaagacacc |
25256049 |
T |
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| Q |
118 |
ttcaatcaatcagaagtgttagctatctggtaca |
151 |
Q |
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| T |
25256048 |
ttca----atcagaagtgttacctatctggtaca |
25256019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 41644463 - 41644515
Alignment:
| Q |
273 |
ttttcagcttatttccttaagtgctctaggataacagatgaaaacagcttata |
325 |
Q |
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| T |
41644463 |
ttttcagcttatttccttaagatctctacgatagcttatgaaaacagcttata |
41644515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 1275203 - 1275148
Alignment:
| Q |
271 |
gtttttcagcttatttccttaagtgctctaggataacagatgaaaacagcttatag |
326 |
Q |
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| T |
1275203 |
gtttttcagcttatttccataagctctccaggataacatatgaaaacagcttatag |
1275148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 367
Target Start/End: Original strand, 425907 - 425941
Alignment:
| Q |
333 |
agtttggctttattttatcttgtattatagaatta |
367 |
Q |
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| T |
425907 |
agtttgactttattttatcttgtattatagaatta |
425941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 322
Target Start/End: Complemental strand, 36638800 - 36638750
Alignment:
| Q |
272 |
tttttcagcttatttccttaagtgctctaggataacagatgaaaacagctt |
322 |
Q |
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| T |
36638800 |
tttttcagcttatttccataagctctctaggataacttatgaaaacagctt |
36638750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 29601026 - 29601079
Alignment:
| Q |
273 |
ttttcagcttatttccttaagtgctctaggataacagatgaaaacagcttatag |
326 |
Q |
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|||||||||||||| | ||||| |||||||||| || |||||||||| |||||| |
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| T |
29601026 |
ttttcagcttattttcataagttctctaggatagcatatgaaaacagattatag |
29601079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 29316793 - 29316846
Alignment:
| Q |
273 |
ttttcagcttatttccttaagtgctctaggataacagatgaaaacagcttatag |
326 |
Q |
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|||||||||||||||| ||||| ||| | |||| | |||||||||||||||||| |
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| T |
29316793 |
ttttcagcttatttccataagttctccaagatagctgatgaaaacagcttatag |
29316846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 15558269 - 15558217
Alignment:
| Q |
273 |
ttttcagcttatttccttaagtgctctaggataacagatgaaaacagcttata |
325 |
Q |
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||||||||||||||| ||||| |||||||||| | |||||||||||||||| |
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| T |
15558269 |
ttttcagcttatttctataagttctctaggatatcttatgaaaacagcttata |
15558217 |
T |
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