View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_low_3 (Length: 733)

Name: NF15789_low_3
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_low_3
NF15789_low_3
[»] chr1 (9 HSPs)
chr1 (207-719)||(9995329-9995841)
chr1 (434-719)||(10006525-10006802)
chr1 (203-509)||(10006213-10006518)
chr1 (11-120)||(9995136-9995242)
chr1 (348-414)||(9924124-9924190)
chr1 (214-283)||(50973530-50973599)
chr1 (256-310)||(41385916-41385970)
chr1 (258-343)||(9924021-9924106)
chr1 (381-415)||(126514-126548)
[»] chr8 (7 HSPs)
chr8 (422-645)||(41476554-41476768)
chr8 (212-300)||(8144795-8144883)
chr8 (212-327)||(29239460-29239575)
chr8 (212-298)||(17904221-17904306)
chr8 (239-315)||(6403348-6403424)
chr8 (641-719)||(41475960-41476038)
chr8 (348-415)||(29239357-29239424)
[»] chr2 (3 HSPs)
chr2 (212-345)||(35349711-35349844)
chr2 (212-342)||(19879866-19879996)
chr2 (211-327)||(34813773-34813890)
[»] chr6 (3 HSPs)
chr6 (212-413)||(8491443-8491648)
chr6 (251-378)||(1113265-1113392)
chr6 (373-415)||(6764098-6764140)
[»] chr5 (1 HSPs)
chr5 (214-345)||(16787456-16787587)
[»] chr4 (7 HSPs)
chr4 (212-327)||(36086867-36086981)
chr4 (348-410)||(4441602-4441664)
chr4 (372-417)||(24404900-24404945)
chr4 (348-412)||(2388923-2388987)
chr4 (256-327)||(4441497-4441568)
chr4 (212-307)||(9607690-9607785)
chr4 (253-296)||(13437034-13437077)
[»] scaffold0655 (1 HSPs)
scaffold0655 (203-298)||(3498-3594)
[»] chr7 (1 HSPs)
chr7 (67-120)||(3587178-3587231)


Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 207 - 719
Target Start/End: Original strand, 9995329 - 9995841
Alignment:
Q  207 gcaatcctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9995329 gcaatcctgcggaattacctaaggaaacgtcaaaatattattcgacattagttccgcaggaaaatcctcagcaaaataaaagatacctgcggattttcct 9995428  T
Q  307 gcgggatctggattcgcaggatacttcctatgactaacaattcctcaggtattcctacggactattttccgcatgaaaatccacaggaaaattgagagtt 406  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9995429 gcgggatctggattcgcaggatacttcctatgactaacaaatcttcaggtattcctacggactattttccgcatgaaaatccacaggaaaattgagagtt 9995528  T
Q  407 tctagtagtaagagttattcacagtggtagaatgcagaatggcaagatataaatcgggagcgtatgtttctccgctccaagtcagagaaccttcctatct 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9995529 tctagtagtaagagttattcacagtggtagaatgcagaatggcaagatataaatcgggagcgtatgtttctccgctccaagtcagagaaccttcctatct 9995628  T
Q  507 tcagttcttcaccgctctcgatgaattttccatttcagaactctcgcactttatcactactagcctttttaacaatttgttttcttttaacaccactatc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9995629 tcagttcttcaccgctctcgatgaattttccatttcagaactctcgcactttatcactactagcctttttaacaatttgttttcttttaacaccactatc 9995728  T
Q  607 aagtacttttttatgaatgagcttatttagctttggatccatacgcttttcttcatctgatcatagagtctcagaaattcaaaaagattatattcctttg 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9995729 aagtacttttttatgaatgagcttatttagctttggatccatacgcttttcttcatctgatcatagagtctcagaaattgaaaaagattatattcctttg 9995828  T
Q  707 taaaccaggaaat 719  Q
    |||||||||||||    
T  9995829 taaaccaggaaat 9995841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 434 - 719
Target Start/End: Original strand, 10006525 - 10006802
Alignment:
Q  434 tagaatgcagaatggcaagatataaatcgggagcgtatgtttctccgctccaagtcagagaaccttcctatcttcagttcttcaccgctctcgatgaatt 533  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        ||||||||||||||    
T  10006525 tagaatgccgaatggcaagatataaatcgggagcgtatgtttctccgctccaagtcagagaaccttcctatcttcact--------gctctcgatgaatt 10006616  T
Q  534 ttccatttcagaactctcgcactttatcactactagcctttttaacaatttgttttcttttaacaccactatcaagtacttttttatgaatgagcttatt 633  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10006617 ttccatttcagaactctcgcactttttcactactagcctttttaacaatttgttttcttttaacaccgctatcaagtacttttttatgaatgagcttatt 10006716  T
Q  634 tagctttggatccatacgcttttcttcatctgatcatagagtctcagaaattcaaaaagattatattcctttgtaaaccaggaaat 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10006717 tagctttggatccatacgcttttcttcatctgatcatagagtctcagaaattcaaaaagattatattcctttgtaaaccaggaaat 10006802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 203 - 509
Target Start/End: Original strand, 10006213 - 10006518
Alignment:
Q  203 cgcagcaatcctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggattt 302  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  10006213 cgcagcattcctgcggaattacctaaggaaacgtcgaaatattattcgacaatagttccgcaggaaaatcctcatcaaaataaaaaatacctgcggattt 10006312  T
Q  303 gcctgcgggatctggattcgcaggatacttcctatgactaacaattcctcaggtattcctacggactattttccgcatgaaaatccacaggaaaattgag 402  Q
    ||||||||||||| ||||||||| |||||| || ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| | |||    
T  10006313 gcctgcgggatcttgattcgcag-atactttctctgactaataaatcctcaggtattcctacggattattttccgcatgaaaatccacaggaaactcgag 10006411  T
Q  403 agtttctagtagtaagagttattcacagtggtagaatgcagaatggcaagatataaatcgggagcgtatgtttctccgctccaagtcagagaaccttcct 502  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||    
T  10006412 agtttctagcggtaagagttattcacagtggtagaatgcagaatggcaagatataaatcgggagcgtatatatctccgctccaagttagagaaccttcct 10006511  T
Q  503 atcttca 509  Q
    |||||||    
T  10006512 atcttca 10006518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 9995136 - 9995242
Alignment:
Q  11 caaaggtacacaagagtggagggacaaaaggccttactacccaaaagggnnnnnnncatccataaggtaatacaacaacacataacaaccctcgagggtg 110  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||       |||||||| ||||||||||||| |||||||||||||||||| ||    
T  9995136 caaaggtacacaagagtggagggacaaaaggccttac---ccaaaagggaaaaaaacatccatagggtaatacaacaatacataacaaccctcgaggctg 9995232  T
Q  111 taagaaccac 120  Q
    ||||||||||    
T  9995233 taagaaccac 9995242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 348 - 414
Target Start/End: Original strand, 9924124 - 9924190
Alignment:
Q  348 tcctcaggtattcctacggactattttccgcatgaaaatccacaggaaaattgagagtttctagtag 414  Q
    ||||||||||||||| |||||||| ||||||||| |||||| |||||||| ||||||||||||||||    
T  9924124 tcctcaggtattcctgcggactatcttccgcatgtaaatccgcaggaaaaatgagagtttctagtag 9924190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 50973530 - 50973599
Alignment:
Q  214 tgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaat 283  Q
    |||||||||||||||| ||||||  ||||| |||| | ||||||||||||||||||||||||| ||||||    
T  50973530 tgcggaattacctaagaaaacgttgaaataatattagtcaatagttccgcaggaaaatcctcaacaaaat 50973599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 41385916 - 41385970
Alignment:
Q  256 agttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcgg 310  Q
    ||||||| || |||||||||||||||||||||  ||||||||||||| |||||||    
T  41385916 agttccgtagaaaaatcctcagcaaaataaaatttacctgcggattttcctgcgg 41385970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 9924021 - 9924106
Alignment:
Q  258 ttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcgggatctggattcgcaggatacttcctatgactaa 343  Q
    ||||||||| || ||| ||| |||||||||| |||| |||||| | ||||||| ||| |||||||||||| ||||  |||||||||    
T  9924021 ttccgcaggtaattccccagtaaaataaaagttacccgcggatgttcctgcggaatccggattcgcaggaaacttggtatgactaa 9924106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 381 - 415
Target Start/End: Complemental strand, 126548 - 126514
Alignment:
Q  381 gaaaatccacaggaaaattgagagtttctagtagt 415  Q
    |||||||||||||||||| ||||||||||||||||    
T  126548 gaaaatccacaggaaaatcgagagtttctagtagt 126514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 5e-52; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 422 - 645
Target Start/End: Complemental strand, 41476768 - 41476554
Alignment:
Q  422 tattcacagtggtagaatgcagaatggcaagatataaatcgggagcgtatgtttctccgctcca-agtcagagaaccttcctatcttcagttcttcaccg 520  Q
    |||||||| ||||||||||||||||| ||||||| ||||| ||||| ||| |||||| |||| | |||||||  |  |||||||||||| |        |    
T  41476768 tattcacaatggtagaatgcagaatgtcaagataaaaatcaggagcctatttttctctgctcaagagtcaga--attttcctatcttcact--------g 41476679  T
Q  521 ctctcgatgaattttccatttcagaactctcgcactttatcactactagcctttttaacaatttgttttcttttaacaccactatcaagtacttttttat 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  41476678 ctctcgatgaattttccatttcagaactctcgcactttatcactattagcttttttaacaatctgttttcttttaacaccactatcaagtactttcttat 41476579  T
Q  621 gaatgagcttatttagctttggatc 645  Q
    ||| ||||||||  |||||||||||    
T  41476578 gaaagagcttatcaagctttggatc 41476554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 8144795 - 8144883
Alignment:
Q  212 cctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggat 300  Q
    ||||||||||| |||||||||||||  ||||| |||| || |||| |||||||||||||| |||||| | |||| || |||||||||||    
T  8144795 cctgcggaatttcctaaggaaacgtagaaataatattggataataattccgcaggaaaattctcagcgatataatagttacctgcggat 8144883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 29239575 - 29239460
Alignment:
Q  212 cctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcggg 311  Q
    ||||||||||| || | ||||||||  ||||| ||||||  ||||| |||||| |||||||||||||||||||||   ||||||||||||| |||  ||     
T  29239575 cctgcggaatttccaatggaaacgttgaaataatattcgtgaatagatccgcaagaaaatcctcagcaaaataaactttacctgcggattttcctctggt 29239476  T
Q  312 atctggattcgcagga 327  Q
    ||||| || |||||||    
T  29239475 atctgtatccgcagga 29239460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 17904221 - 17904306
Alignment:
Q  212 cctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcgg 298  Q
    |||| |||||| |||||||||||||  ||||| |||||| |||||  || ||||||||||||||||| ||||||||| |||||||||    
T  17904221 cctgtggaatttcctaaggaaacgttgaaataatattcgtcaatatatc-gcaggaaaatcctcagctaaataaaagttacctgcgg 17904306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 6403348 - 6403424
Alignment:
Q  239 aaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcgggatct 315  Q
    ||||| |||| || |||| ||||||||| |||||||||||||||||| || ||||||||||| | ||||||| ||||    
T  6403348 aaataatatttgataataattccgcaggtaaatcctcagcaaaataataggtacctgcggatgttcctgcggcatct 6403424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 719
Target Start/End: Complemental strand, 41476038 - 41475960
Alignment:
Q  641 ggatccatacgcttttcttcatctgatcatagagtctcagaaattcaaaaagattatattcctttgtaaaccaggaaat 719  Q
    |||||||| | ||| |||||||||||||||||||||| ||| | |||||||||||   |||||||| ||| ||||||||    
T  41476038 ggatccattcccttctcttcatctgatcatagagtctaagagagtcaaaaagattcccttcctttgaaaagcaggaaat 41475960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 29239424 - 29239357
Alignment:
Q  348 tcctcaggtattcctacggactattttccgcatgaaaatccacaggaaaattgagagtttctagtagt 415  Q
    |||||||||||| || |||| | |||||||||||||||||| |||| |||| |||| ||||| |||||    
T  29239424 tcctcaggtattgctgcggattgttttccgcatgaaaatccgcagggaaatagagaatttctggtagt 29239357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 212 - 345
Target Start/End: Original strand, 35349711 - 35349844
Alignment:
Q  212 cctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcggg 311  Q
    |||||||||||||||||||||||||| ||||| |||||  |||||||||||||||||||||||||||||  | |||| ||||||||||||| |||| |||    
T  35349711 cctgcggaattacctaaggaaacgtccaaataatattcctcaatagttccgcaggaaaatcctcagcaattttaaagttacctgcggattttcctgtggg 35349810  T
Q  312 atctggattcgcaggatacttcctatgactaaca 345  Q
    ||| |||||||||||||||||| |||||||||||    
T  35349811 atccggattcgcaggatacttcgtatgactaaca 35349844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 212 - 342
Target Start/End: Complemental strand, 19879996 - 19879866
Alignment:
Q  212 cctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcggg 311  Q
    ||||||||||| ||||||||||| | |||||| |||||  |||||||| || ||||||||||||||| || |||||| |||||||||||||  | ||||     
T  19879996 cctgcggaatttcctaaggaaacattaaaataatattcctcaatagtttcgaaggaaaatcctcagctaagtaaaagttacctgcggattttgcagcggc 19879897  T
Q  312 atctggattcgcaggatacttcctatgacta 342  Q
     | ||||||||||||| ||||| || |||||    
T  19879896 ctatggattcgcaggaaacttcgtaagacta 19879866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 327
Target Start/End: Complemental strand, 34813890 - 34813773
Alignment:
Q  211 tcctgcggaattacctaaggaaacgtcaaaatat-tattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcg 309  Q
    |||||||||||||| | ||||||||| || |||  |||| ||  ||| |||||||||||||| |||||| |||||| || ||||| ||||| | ||||||    
T  34813890 tcctgcggaattacgtgaggaaacgtaaatatagctattggatgataattccgcaggaaaattctcagctaaataatagttacctacggatgttcctgcg 34813791  T
Q  310 ggatctggattcgcagga 327  Q
    | ||||| || |||||||    
T  34813790 gcatctgaatgcgcagga 34813773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 6e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 212 - 413
Target Start/End: Original strand, 8491443 - 8491648
Alignment:
Q  212 cctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcggg 311  Q
    |||||||||||  ||||||||||||  ||| | |||||||||| | ||||||| ||||||||||||||||||||||  |||||||||| || ||| |||     
T  8491443 cctgcggaattttctaaggaaacgttgaaaaaatattcgacaacaattccgcaagaaaatcctcagcaaaataaaacttacctgcggagtttcctacggc 8491542  T
Q  312 atctggattcgcaggatacttcctatgactaac----aattcctcaggtattcctacggactattttccgcatgaaaatccacaggaaaattgagagttt 407  Q
     |||||||| |||||| ||||| |||||||  |    || |||||||||||||||  ||| ||||||||||||||| |||| ||||||||  ||||||||    
T  8491543 ttctggattggcaggaaacttcgtatgactttcattaaaatcctcaggtattcctgtggattattttccgcatgaacatccgcaggaaaaacgagagttt 8491642  T
Q  408 ctagta 413  Q
    ||||||    
T  8491643 ctagta 8491648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 1113265 - 1113392
Alignment:
Q  251 acaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcgggatctggattcgcaggatacttcctatgactaacaattcc 350  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||||||| | ||||  |   | |||||||||  |||| |||||||   || |||    
T  1113265 acaatagttccgcaggaaaatcctcaactaaataaaagttacctgcggatttgtcagcggcgtactgtttcgcaggaagcttcatatgactgcaaaatcc 1113364  T
Q  351 tcaggtattcctacggactattttccgc 378  Q
    |||||||||||| |||| ||||||||||    
T  1113365 tcaggtattcctgcggattattttccgc 1113392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 6764098 - 6764140
Alignment:
Q  373 ttccgcatgaaaatccacaggaaaattgagagtttctagtagt 415  Q
    ||||||| | ||||||||||||||||||||||||||| |||||    
T  6764098 ttccgcaggcaaatccacaggaaaattgagagtttcttgtagt 6764140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 214 - 345
Target Start/End: Original strand, 16787456 - 16787587
Alignment:
Q  214 tgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcgggat 313  Q
    ||||||||| |||||||||| ||  ||||| || ||| |||||||||||||||||||||||||||||| ||||   ||||||||||| | |||||||  |    
T  16787456 tgcggaatttcctaaggaaatgttgaaataataatcgtcaatagttccgcaggaaaatcctcagcaaattaaagtgtacctgcggatgttcctgcggctt 16787555  T
Q  314 ctggattcgcaggatacttcctatgactaaca 345  Q
    |||||||||||||| || || |||||| ||||    
T  16787556 ctggattcgcaggaaacctcgtatgacaaaca 16787587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 36086867 - 36086981
Alignment:
Q  212 cctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcggg 311  Q
    ||||||||||| |||||||||||||  ||||| |||||| |||  |||| ||||||||||||||||| |||| |||| |||| || ||||| |||||||     
T  36086867 cctgcggaatttcctaaggaaacgttcaaataatattcgtcaacggttcggcaggaaaatcctcagc-aaattaaagttacccgcagattttcctgcggt 36086965  T
Q  312 atctggattcgcagga 327  Q
    ||||| ||||||||||    
T  36086966 atctgaattcgcagga 36086981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 4441602 - 4441664
Alignment:
Q  348 tcctcaggtattcctacggactattttccgcatgaaaatccacaggaaaattgagagtttcta 410  Q
    ||||||||||||||| |||| || |||||||||| |||||| ||||||||| ||||| |||||    
T  4441602 tcctcaggtattcctgcggaataatttccgcatgtaaatccgcaggaaaatcgagagattcta 4441664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 24404945 - 24404900
Alignment:
Q  372 tttccgcatgaaaatccacaggaaaattgagagtttctagtagtaa 417  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||||    
T  24404945 tttccacatgaaaatctgcaggaaaattgagagtttctagtagtaa 24404900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 2388923 - 2388987
Alignment:
Q  348 tcctcaggtattcctacggactattttccgcatgaaaatccacaggaaaattgagagtttctagt 412  Q
    ||||||||||||||| |||| |||||| | |||| |||||| ||||||||  |||||||||||||    
T  2388923 tcctcaggtattcctgcggattattttgcccatgcaaatccgcaggaaaaacgagagtttctagt 2388987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 4441497 - 4441568
Alignment:
Q  256 agttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctgcgggatctggattcgcagga 327  Q
    ||||||| || ||||||||| |||||||||||| |||||  |||||| |||||||  || ||||||||||||    
T  4441497 agttccgtagaaaaatcctctgcaaaataaaagttacctttggattttcctgcggtttcgggattcgcagga 4441568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 9607690 - 9607785
Alignment:
Q  212 cctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcggatttgcctg 307  Q
    |||||||||||  |||||||||||   ||||  |||||| ||||||| ||||||  ||||| |||||||||||  || ||||||||||||| ||||    
T  9607690 cctgcggaatttactaaggaaacgctgaaatcatattcgccaatagtaccgcagagaaatcttcagcaaaatagtagttacctgcggattttcctg 9607785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 13437034 - 13437077
Alignment:
Q  253 aatagttccgcaggaaaatcctcagcaaaataaaagatacctgc 296  Q
    |||| |||||||||||||||||||||||||||| || |||||||    
T  13437034 aataattccgcaggaaaatcctcagcaaaataatagttacctgc 13437077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 203 - 298
Target Start/End: Original strand, 3498 - 3594
Alignment:
Q  203 cgcagcaat-cctgcggaattacctaaggaaacgtcaaaatattattcgacaatagttccgcaggaaaatcctcagcaaaataaaagatacctgcgg 298  Q
    ||||||||| ||||| ||||| ||| |||||||||  |||||  ||||| ||| |||||||||| |||||||||||||||||||| | |||||||||    
T  3498 cgcagcaatacctgcagaatttccttaggaaacgttgaaataacattcgtcaacagttccgcagaaaaatcctcagcaaaataaatgttacctgcgg 3594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 3587231 - 3587178
Alignment:
Q  67 catccataaggtaatacaacaacacataacaaccctcgagggtgtaagaaccac 120  Q
    |||||||||||||||||||| | ||||| ||||||| |||||| ||||||||||    
T  3587231 catccataaggtaatacaacgatacatagcaacccttgagggtataagaaccac 3587178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University