View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_low_30 (Length: 375)

Name: NF15789_low_30
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_low_30
NF15789_low_30
[»] chr2 (5 HSPs)
chr2 (11-276)||(31068542-31068808)
chr2 (11-113)||(31060088-31060190)
chr2 (252-309)||(31060290-31060347)
chr2 (276-314)||(31068830-31068868)
chr2 (323-359)||(34319803-34319839)
[»] chr1 (2 HSPs)
chr1 (323-359)||(17349514-17349550)
chr1 (323-359)||(8757262-8757298)
[»] chr7 (3 HSPs)
chr7 (323-359)||(36332713-36332749)
chr7 (323-359)||(25091244-25091280)
chr7 (323-359)||(41780543-41780579)
[»] chr4 (3 HSPs)
chr4 (323-359)||(49479540-49479576)
chr4 (323-359)||(13538243-13538279)
chr4 (323-359)||(23894273-23894309)
[»] chr3 (1 HSPs)
chr3 (326-359)||(54240688-54240721)
[»] chr8 (1 HSPs)
chr8 (323-359)||(13147732-13147768)
[»] chr5 (1 HSPs)
chr5 (323-359)||(28282419-28282455)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 31068542 - 31068808
Alignment:
Q  11 cacagagattgaacactgcgaaactcattcagattgtccacattatatgtgtaactcacctcaaactccttggtgcatggcatacgaatgttggtgcttc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31068542 cacagagattgaacactgcgaaactcattcagattgtccacattatatgtgtgactcacctcaaactccttggtgcatggcatacgaatgttggtgcttc 31068641  T
Q  111 taaatgtaatagttaacttaaaaatcaattctctatttctttaagcttataattggatttgtaatattgttggtatttaaaattttcttgcacttcga-t 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    |||||| |    
T  31068642 taaatgtaatagttaacttaaaaatcaattctctatttctttaagcttataattggatttgtaatattgttgctatttaagattttctcctgcttcgatt 31068741  T
Q  210 tatgcttctattagttttcaattacttttgacaagttcatagttaccttgttgtcaaagaaaatata 276  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  31068742 tatgcttctattagctttaaattacttttgacaagttcatagttaccttgttgccaaagaaaatata 31068808  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 31060088 - 31060190
Alignment:
Q  11 cacagagattgaacactgcgaaactcattcagattgtccacattatatgtgtaactcacctcaaactccttggtgcatggcatacgaatgttggtgcttc 110  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||| ||||| |||||| |    
T  31060088 cacagatattgaaaactgcgaaactcattcagattgtccacattatatgtgtacctcaccagaaactccttggtgcgtggcataccaatgtgggtgctac 31060187  T
Q  111 taa 113  Q
    |||    
T  31060188 taa 31060190  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 31060290 - 31060347
Alignment:
Q  252 ttaccttgttgtcaaagaaaatataaaaaacaaccgtgcataaatatcactagcaact 309  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||| || |||||||    
T  31060290 ttacctttttgtcaaagaaaatatcaaaaacaacggtgcataaatataaccagcaact 31060347  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 31068830 - 31068868
Alignment:
Q  276 aaaaaacaaccgtgcataaatatcactagcaactgtttt 314  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  31068830 aaaaaacaatcgtgcataaatatcactaacaactgtttt 31068868  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 34319803 - 34319839
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    ||||||||||||||| | |||||||||||||||||||    
T  34319803 gtcaagtagtctagtggctagattcacacacattatg 34319839  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 17349514 - 17349550
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    |||||||||||||||||||||||||||||||||||||    
T  17349514 gtcaagtagtctagtagttagattcacacacattatg 17349550  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 8757262 - 8757298
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  8757262 gtcaagtagcctagtggttagattcacacacattatg 8757298  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 36332713 - 36332749
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    |||||||||||||||||||||||||||| ||||||||    
T  36332713 gtcaagtagtctagtagttagattcacatacattatg 36332749  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 25091280 - 25091244
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    ||||||||||||||| | |||||||||||||||||||    
T  25091280 gtcaagtagtctagtggctagattcacacacattatg 25091244  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 41780579 - 41780543
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  41780579 gtcaagtagcctagtggttagattcacacacattatg 41780543  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 49479576 - 49479540
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    ||||||||||||||| |||||||||||||||||||||    
T  49479576 gtcaagtagtctagtggttagattcacacacattatg 49479540  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 13538243 - 13538279
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    ||||||||||||||| | |||||||||||||||||||    
T  13538243 gtcaagtagtctagtggctagattcacacacattatg 13538279  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 23894273 - 23894309
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    ||||||||||||||| || ||||||||||||||||||    
T  23894273 gtcaagtagtctagtggtcagattcacacacattatg 23894309  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 359
Target Start/End: Complemental strand, 54240721 - 54240688
Alignment:
Q  326 aagtagtctagtagttagattcacacacattatg 359  Q
    |||||||||||| |||||||||||||||||||||    
T  54240721 aagtagtctagtggttagattcacacacattatg 54240688  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 13147732 - 13147768
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    ||||||||||||||| | |||||||||||||||||||    
T  13147732 gtcaagtagtctagtggctagattcacacacattatg 13147768  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 28282455 - 28282419
Alignment:
Q  323 gtcaagtagtctagtagttagattcacacacattatg 359  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  28282455 gtcaagtagtctagtggttagattcacacatattatg 28282419  T

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