View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_31 (Length: 374)
Name: NF15789_low_31
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 21 - 363
Target Start/End: Original strand, 34619699 - 34620045
Alignment:
| Q |
21 |
atagaaacggcaaaacaaacgcaaaaagtagtctgcttcctttgagttgtttaagaattaataaggtcatataatcacttttaagctaaaa-aagctgtt |
119 |
Q |
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| T |
34619699 |
atagaaacggcaaaacaaacgcaaaaagtagtctgcttcctttgagttgtttaagaatta-taaggtcatataatcacttttaagctaaaaaaagctgtt |
34619797 |
T |
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| Q |
120 |
ttcattctgtaatcaacgagtcactaaatgtcaaacacaaacatttacaaagttattttgcaataattctaaatcctaaagggaatatattttcctcaat |
219 |
Q |
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| T |
34619798 |
ttcattctgtaatcaacgagtcactaaatgtcaaacacaaacgtttacaaagttattttgcaataattctaaatcctaaagggaatatattttcctcaat |
34619897 |
T |
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| Q |
220 |
tgcaccctatattatcattgttaattacctttctgacttgggcttgtaattatgtacatgtttaagcggt----gtttggcctaatgcttcattattccc |
315 |
Q |
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| T |
34619898 |
tgcaccctatattatcattgttaattacctttctgacttaggcttgtaattatgtacatgtttaagaggttttaatttggcctaatgcttcattattccc |
34619997 |
T |
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| Q |
316 |
aatgacggtgagaatctatctttaacacatttcatcattgtctttcat |
363 |
Q |
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| T |
34619998 |
aatgacggtgagaatctatctttaacacatttcatcattgtctttcat |
34620045 |
T |
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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 175 - 344
Target Start/End: Complemental strand, 51054757 - 51054589
Alignment:
| Q |
175 |
ttttgcaataattctaaatcctaaagggaatatattttc-ctcaattgcaccctatattatcattgttaattacctttctgacttgggcttgtaattatg |
273 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||| | | || ||||||||||| ||||||||||||| |||||||||||| |
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| T |
51054757 |
ttttgcaataattctaaattctaaagggaatatattttttctcaattgcaccttttttttacattgttaattgcctttctgacttgtgcttgtaattata |
51054658 |
T |
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| Q |
274 |
tacatgtttaagcggtgtttggcctaatgcttcattattcccaatgacggtgagaatctatctttaacaca |
344 |
Q |
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|| |||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51054657 |
ta--tgtttaagaggtttttggcctaatgcttcattattgccaatgacggtgagaatctatctttaacaca |
51054589 |
T |
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