View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_32 (Length: 373)
Name: NF15789_low_32
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 53 - 364
Target Start/End: Complemental strand, 34263991 - 34263680
Alignment:
| Q |
53 |
tcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaac |
152 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | || ||||||||||||||||||| |
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| T |
34263991 |
tcatgggatgaaataatagaaaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacaac |
34263892 |
T |
|
| Q |
153 |
aatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaact |
252 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
34263891 |
agtcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttgcaaact |
34263792 |
T |
|
| Q |
253 |
cccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccacaa |
352 |
Q |
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| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
34263791 |
ctcaagatcttcttggtcttgggacacacacccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcacaggtttaccacaa |
34263692 |
T |
|
| Q |
353 |
tcttctttcttc |
364 |
Q |
| |
|
|||||||||||| |
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| T |
34263691 |
tcttctttcttc |
34263680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 152 - 364
Target Start/End: Complemental strand, 35622810 - 35622598
Alignment:
| Q |
152 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaac |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622810 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaac |
35622711 |
T |
|
| Q |
252 |
tcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccaca |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622710 |
tcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccaca |
35622611 |
T |
|
| Q |
352 |
atcttctttcttc |
364 |
Q |
| |
|
||||||||||||| |
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| T |
35622610 |
atcttctttcttc |
35622598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 35623133 - 35622991
Alignment:
| Q |
18 |
gttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35623133 |
gttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgt |
35623034 |
T |
|
| Q |
118 |
tcttgtagcaatagcaatgttctttgatgcacaacaatcattc |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35623033 |
tcttgtagcaatagcaatgttctttgatgcacaacaatcattc |
35622991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 14542785 - 14543117
Alignment:
| Q |
19 |
ttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgtt |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14542785 |
ttccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgtt |
14542884 |
T |
|
| Q |
119 |
cttgtagcaatagcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaatt |
218 |
Q |
| |
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||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14542885 |
cttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactg------------cacaaatt |
14542972 |
T |
|
| Q |
219 |
catcatgttcttcatcctctgatatttgcaaactcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttga |
318 |
Q |
| |
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|| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
14542973 |
caatatgcacttcatcctctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattggaatcttga |
14543072 |
T |
|
| Q |
319 |
atgtgctagcacattcgtcataggtttaccacaatcttctttctt |
363 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
14543073 |
atgtgctagcacattcatcactggtttaccacaatcttctttctt |
14543117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 14580802 - 14580470
Alignment:
| Q |
19 |
ttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgtt |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14580802 |
ttccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgtt |
14580703 |
T |
|
| Q |
119 |
cttgtagcaatagcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaatt |
218 |
Q |
| |
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||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14580702 |
cttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgca------------caaatt |
14580615 |
T |
|
| Q |
219 |
catcatgttcttcatcctctgatatttgcaaactcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttga |
318 |
Q |
| |
|
|| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
14580614 |
caatatgcacttcatcctctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattggaatcttga |
14580515 |
T |
|
| Q |
319 |
atgtgctagcacattcgtcataggtttaccacaatcttctttctt |
363 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
14580514 |
atgtgctagcacattcatcactggtttaccacaatcttctttctt |
14580470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 49 - 334
Target Start/End: Original strand, 37599763 - 37600048
Alignment:
| Q |
49 |
gttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgca |
148 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||||||| || |||||||| || |||||||||||||||||||| || ||||||||||||||| |
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| T |
37599763 |
gttatcatgggatgaaattatagaaatttttttatcaaattttggttgaatggatttatttcaagctgttcttgtagcaattgctatgttctttgatgca |
37599862 |
T |
|
| Q |
149 |
caacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgca |
248 |
Q |
| |
|
||| | ||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
37599863 |
caagagtcatttataagcatttacactgataattacccaaaatggcattgcatagacacaaacacaaattcatcatgtactccatcctctgatatttgca |
37599962 |
T |
|
| Q |
249 |
aactcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattc |
334 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| || ||||||| |
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|
| T |
37599963 |
aactctagagatcttcttggtcttgggacacacacccttcaaacacaatcatttctaactggaatcttgaatgtgttaacacattc |
37600048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 37605482 - 37605591
Alignment:
| Q |
140 |
tttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctg |
239 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||| |
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|
| T |
37605482 |
tttgatgcacaacaatcattcacaggcatttaccttgataattacccaaaatggcactgcacaaacac--acacaaattcatcatgcactccatcctctg |
37605579 |
T |
|
| Q |
240 |
atatttgcaaac |
251 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37605580 |
atatttgcaaac |
37605591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 10403887 - 10403972
Alignment:
| Q |
117 |
ttcttgtagcaatagcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcaca |
202 |
Q |
| |
|
|||||||| || | ||||||||||| || ||||||||||||||||||| |||||||| || ||||||||| |||||| |||||| |
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|
| T |
10403887 |
ttcttgtatcattcgcaatgttcttcgacgcacaacaatcattcataacaatttacaccgacgattacccaacatggcattgcaca |
10403972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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