View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_33 (Length: 366)
Name: NF15789_low_33
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 120 - 351
Target Start/End: Original strand, 32647275 - 32647505
Alignment:
| Q |
120 |
aaatcaagtccattagttccattgttgttctctcactttctcctctaatttgcaaactcaatcccagctgaagaccctttcttttttgtgataaaattaa |
219 |
Q |
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| T |
32647275 |
aaatcaagtccactagttccattgttgttatctcactttctcctctaatttgcaaactcaatccgagctgaagaccctttcttttttgtgataaaattaa |
32647374 |
T |
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| Q |
220 |
gggaagcgatcattgattccatcatcttcaaataaccagatctaattattttgggaaatgattattgtttccaaatagagctaaaatggtttacaaataa |
319 |
Q |
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| T |
32647375 |
gggaagcgatcattgattccatcatcttcaaataaccaaatctaattattttaggaaatgattattgtttccaaatagagctaaaatggtttacaaataa |
32647474 |
T |
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| Q |
320 |
aaatataaatagttaatcacaagagatcatca |
351 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
32647475 |
aaatataaatagttaatcac-agagatcatca |
32647505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 32646863 - 32646974
Alignment:
| Q |
12 |
atgaaaaggttgcaagtctatcaaggttcttgatctatgttgttgtgcttatatgttccagagacaatgcgggaaccaactggagtaagagtgacttttt |
111 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32646863 |
atgaaaaggttgtaagtctatcaaggttcttgatctatgttgttgtgcttataggttccagagacaatgcgggaaccaactggagtaagagtggcttttt |
32646962 |
T |
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| Q |
112 |
agtaaaataaat |
123 |
Q |
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|||||||||||| |
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| T |
32646963 |
agtaaaataaat |
32646974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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