View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_34 (Length: 364)
Name: NF15789_low_34
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 49257683 - 49257328
Alignment:
| Q |
1 |
ctgtgtgaaagctttttcctccttggaccatacagtatatgagatatgatctttttaattaatcaagttggcaactctgaggaatcttctttatttgctc |
100 |
Q |
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| T |
49257683 |
ctgtgtgaatgctttttcctccttggaccatacagtatatgagatatgatctttttaattaatcaagttggcaactctgaggaatcttctttatttgctc |
49257584 |
T |
|
| Q |
101 |
aaactaatctatcctttctactgcaaaaccttcttgaaatatcctttcccgtgccttaattgcctgcaatcatagacactcaagaaatgagtatatttta |
200 |
Q |
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| T |
49257583 |
aaactaatctatcctttgtactgcaaaactttcttgaaatatcctttcccgtgccttaattgcctgcaatcatagacactcaagaaatgagtatatttta |
49257484 |
T |
|
| Q |
201 |
atgaatggtatatgttcaaaactcttgcagaatcttaataagatagcatggcctaagatgctagttctctgagtatgaacattgatatcttctctagttt |
300 |
Q |
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| T |
49257483 |
atgaatggtatatgttcaaaactcttgcagaatcttaataagatagcatggcctaagatgctagttctctgagtatgaacattgatatcttctctagttt |
49257384 |
T |
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| Q |
301 |
aacatatttccttgaaaatatttagcttgacagaatttcttgatctgtgctgctcc |
356 |
Q |
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| T |
49257383 |
aacatatttccttgaaaatatttagcttgacagaatttcttgatctgagatgctcc |
49257328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 133 - 354
Target Start/End: Complemental strand, 49270532 - 49270311
Alignment:
| Q |
133 |
cttgaaatatcctttcccgtgccttaattgcctgcaatcatagacactcaagaaatgagtatattttaatgaatggtatatgttcaaaactcttgcagaa |
232 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||| || |||||| | ||||||| ||| || ||| |||||||||||| || ||||| |
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| T |
49270532 |
cttgaaatatcctttcccgtgccttgattgcctgcaatca--gacattccagaaattattatatttcaataaacagtacatgttcaaaactgttacagaa |
49270435 |
T |
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| Q |
233 |
tcttaataagatagcatggcctaagatgctagttc--tctgagtatgaacattgatatcttctctagtttaacatatttccttgaaaatatttagcttga |
330 |
Q |
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|| ||||||||||||| ||||||||||| |||||| | ||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||| |
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| T |
49270434 |
tcataataagatagcaaggcctaagatgttagttctgtttgagtatgaacataattatcttctcaagtttaacataataatgtgaaaatatttagcttga |
49270335 |
T |
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| Q |
331 |
cagaatttcttgatctgtgctgct |
354 |
Q |
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||| ||||||||||||||| |||| |
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| T |
49270334 |
caggatttcttgatctgtgatgct |
49270311 |
T |
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