View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_low_35 (Length: 363)

Name: NF15789_low_35
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_low_35
NF15789_low_35
[»] chr3 (6 HSPs)
chr3 (111-336)||(20014734-20014955)
chr3 (111-334)||(26648461-26648684)
chr3 (125-287)||(20006850-20007012)
chr3 (116-334)||(26654466-26654679)
chr3 (111-236)||(17115408-17115533)
chr3 (127-188)||(19990584-19990645)
[»] chr5 (2 HSPs)
chr5 (111-334)||(26353461-26353684)
chr5 (111-348)||(9816398-9816632)
[»] chr1 (1 HSPs)
chr1 (116-275)||(1718499-1718658)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 111 - 336
Target Start/End: Complemental strand, 20014955 - 20014734
Alignment:
Q  111 tgatcatgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatg 210  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| |||||    
T  20014955 tgatcatgaagctttggttttcttaaaagagcaatacttgaagaatcaagaggaactcaggcttctggcaagacaacaagatgagatgttacggctaatg 20014856  T
Q  211 gatttgaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaacaaccaccaccatcattttcttaaaactttatgttgt 310  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||   |||||||||||||| | ||||||||| ||| ||||||    
T  20014855 gatttgaagatgaagagggatgaagagttgagacaacttctcactagttttctaaagaat---caaccaccaccatcttcttcttaaaa-tttttgttgt 20014760  T
Q  311 ttttgaattctgttcctgaaactcgt 336  Q
    ||||||||||||||||||||||||||    
T  20014759 ttttgaattctgttcctgaaactcgt 20014734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 111 - 334
Target Start/End: Original strand, 26648461 - 26648684
Alignment:
Q  111 tgatcatgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatg 210  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||| | ||||||||||||||||| |||||||| | ||||||     
T  26648461 tgatcatgaagttgtggttttgttaaaagagctatacttgaagaaccaagaggaactcaggcgcctggcaagacaacaagaaaagatgtttcagttaata 26648560  T
Q  211 gatttgaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaacaaccaccaccatcattttcttaaaactttatgttgt 310  Q
    |||||||||  |||||||||||||||| |||| ||||| ||||||||| |||| |||||||||||||||||| |||| ||||||||||||||||  ||||    
T  26648561 gatttgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctaaagaatcaacaaccaccatcatctttttcttaaaactttaatttgt 26648660  T
Q  311 ttttgaattctgttcctgaaactc 334  Q
    |||||||||||  |||||||||||    
T  26648661 ttttgaattctcctcctgaaactc 26648684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 287
Target Start/End: Complemental strand, 20007012 - 20006850
Alignment:
Q  125 tggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatggatttgaagatgaa 224  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||||||  ||||||||  | |||||| ||||  |  |||    
T  20007012 tggttttgttaaaagagcaatacttgaagaatcaagaggaactcacgcatctggcaagacaacaagaggagatgttagaggtaatggctttgtgggagaa 20006913  T
Q  225 gagggatgaagagctgagacaacttctcactagttttctgaagaatcaacaaccaccaccatc 287  Q
    ||||||||||||| ||||||| || || |||||| |||| | |||||| |  |||||||||||    
T  20006912 gagggatgaagagttgagacacctccttactagtgttctaaggaatcagctgccaccaccatc 20006850  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 116 - 334
Target Start/End: Original strand, 26654466 - 26654679
Alignment:
Q  116 atgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatggattt 215  Q
    |||||||| || |||| || ||||||||   | ||||||||||||||||| |     |||| ||||||||||||||  |||||||||| |||||||||||    
T  26654466 atgaagttgtgattttattgaaagagcatagcttgaagaatcaagaggaaatggcacgtctagcaagacaacaagaagagatgttacgtttaatggattt 26654565  T
Q  216 gaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaacaaccaccaccatcattttcttaaaactttatgtt-gttttt 314  Q
    || |  ||| || ||||||||| |||| ||||||||||||||| |||| | |||||||||||||||| ||||      |||||||||||| || ||||||    
T  26654566 gagggagaaaagagatgaagagttgaggcaacttctcactagtgttctaaggaatcaacaaccaccatcatc------ttaaaactttatatttgttttt 26654659  T
Q  315 gaattctgttcctgaaactc 334  Q
    ||||||| ||| ||||||||    
T  26654660 gaattctcttcatgaaactc 26654679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 17115408 - 17115533
Alignment:
Q  111 tgatcatgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatg 210  Q
    ||||||||||  | ||||| || |||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||   |||||| | |||||||    
T  17115408 tgatcatgaaaatgtggttctgctaaaagagcaatacttgaagaatcaagacgaactcaggcgtctggcaagacaacatgaagtgatgtttcagttaatg 17115507  T
Q  211 gatttgaagatgaagagggatgaaga 236  Q
    | ||||||   |||||||| ||||||    
T  17115508 gctttgaaagagaagaggggtgaaga 17115533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 19990584 - 19990645
Alignment:
Q  127 gttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaaca 188  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||   ||||||||||| ||||    
T  19990584 gttttcttaaaagagaaatacttgaagaatcaagaggaactcacacgtctggcaagagaaca 19990645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 111 - 334
Target Start/End: Complemental strand, 26353684 - 26353461
Alignment:
Q  111 tgatcatgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatg 210  Q
    |||||||||| || |||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||  |||||||||| |||||     
T  26353684 tgatcatgaacttgtggtttggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacaggaagagatgttacgattaata 26353585  T
Q  211 gatttgaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaacaaccaccaccatcattttcttaaaactttatgttgt 310  Q
    |||| ||||  |||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||| |||| | ||||||||||||||| ||||    
T  26353584 gattcgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctgaagaatcaacaaccaccatcatcttcttcttaaaactttattttgt 26353485  T
Q  311 ttttgaattctgttcctgaaactc 334  Q
    ||||||||||  ||| ||||||||    
T  26353484 ttttgaattcccttcatgaaactc 26353461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 111 - 348
Target Start/End: Original strand, 9816398 - 9816632
Alignment:
Q  111 tgatcatgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatg 210  Q
    ||||||||| ||| |||||| ||||||||||||| || ||||| ||||| ||||||| ||| || ||||||||||||||||  ||||||| | ||||||     
T  9816398 tgatcatgatgttctggtttggttaaaagagcaacacttgaaggatcaaaaggaacttaggcgtttggcaagacaacaagaagagatgtttcagttaata 9816497  T
Q  211 gatttgaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaacaaccaccaccatcattttcttaaaactttatgttgt 310  Q
    |||||||||  |||||||||||||||| |||| || ||||||||||||||||| |||||||||||   ||||||||| | |||||||| |||||| |||     
T  9816498 gatttgaaggagaagagggatgaagagttgaggcatcttctcactagttttctcaagaatcaaca---accaccatcgtcttcttaaacctttattttgc 9816594  T
Q  311 ttttgaattctgttcctgaaactcgtgatggtgatgct 348  Q
    |||| |||||| |||||||||||| |||  ||||||||    
T  9816595 tttttaattctcttcctgaaactcatgacagtgatgct 9816632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 116 - 275
Target Start/End: Original strand, 1718499 - 1718658
Alignment:
Q  116 atgaagttttggttttgttaaaagagcaatacctgaagaatcaagaggaactcaggtgtctggcaagacaacaagataagatgttacggttaatggattt 215  Q
    |||||||| ||||||||||||||||| ||| | |||||||||||||||| |||    |||||||||||||||| ||  |||||||||||||||||| |||    
T  1718499 atgaagttatggttttgttaaaagaggaatgcatgaagaatcaagaggagctcgcacgtctggcaagacaacaggaagagatgttacggttaatgggttt 1718598  T
Q  216 gaagatgaagagggatgaagagctgagacaacttctcactagttttctgaagaatcaaca 275  Q
    |  |  ||||| |||||||||| |||| ||||| ||||||||| || ||| |||||||||    
T  1718599 gtgggagaagaaggatgaagagttgaggcaactactcactagtgttttgaggaatcaaca 1718658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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