View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_low_37 (Length: 351)

Name: NF15789_low_37
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_low_37
NF15789_low_37
[»] chr6 (6 HSPs)
chr6 (17-340)||(3015078-3015403)
chr6 (226-340)||(7095700-7095814)
chr6 (226-340)||(8800427-8800541)
chr6 (228-340)||(7106793-7106905)
chr6 (228-340)||(8787725-8787837)
chr6 (61-176)||(30453618-30453731)
[»] chr2 (5 HSPs)
chr2 (58-137)||(17793549-17793628)
chr2 (72-175)||(42560474-42560577)
chr2 (61-150)||(43362081-43362170)
chr2 (82-149)||(39791434-39791501)
chr2 (72-202)||(36206426-36206558)
[»] chr7 (3 HSPs)
chr7 (61-126)||(12837101-12837166)
chr7 (61-149)||(47070669-47070755)
chr7 (72-175)||(16364342-16364441)
[»] chr1 (3 HSPs)
chr1 (61-162)||(25724357-25724458)
chr1 (72-155)||(23595400-23595483)
chr1 (80-176)||(41005178-41005275)
[»] chr8 (2 HSPs)
chr8 (61-162)||(16602627-16602728)
chr8 (71-176)||(5860239-5860344)
[»] chr5 (1 HSPs)
chr5 (80-156)||(34409525-34409601)
[»] chr3 (2 HSPs)
chr3 (72-137)||(339952-340017)
chr3 (61-137)||(9735267-9735343)
[»] chr4 (2 HSPs)
chr4 (61-176)||(10383419-10383533)
chr4 (61-136)||(32026157-32026230)
[»] scaffold0360 (1 HSPs)
scaffold0360 (122-176)||(14424-14478)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 3015403 - 3015078
Alignment:
Q  17 agtacaattggttaccttaacttggttacaatcaaggttttaggcttacatagccacaaatacaaataaaattatttaggcgcacacataacaa---tga 113  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | | |||||| |||||   |||    
T  3015403 agtacaattggttagcttaacttggttacaatcaaggttttagacttacataaccacaaatacaaataaaattattttgactcacacacaacaacaatga 3015304  T
Q  114 taaaaattaaatgataaagaaattgattacatcatttaacatctttaaattattttatctttacaaagaaacatatctgtgtgtgagtgagtct-aaatt 212  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||  |||| | || ||| |    
T  3015303 caaaaattaaatgataaagaaattgattacatcattcaacatctttaaatcatttcatctttacaaagaaacatatatgtgtg--agtgcgcctgaaact 3015206  T
Q  213 ttttaataatatccacaatcaagaccttctttcccttctttgcagtgtttggcaaataagccagttggatattttccatgaagatttatgtaactaaaca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3015205 ttttaataatatccacaatcaagaccttctttcccttctttgcagtgtttggcaaataagccagttggatattttccatgaagatttatgtaactaaaca 3015106  T
Q  313 taacgttagcacaatcagttgtcaagtc 340  Q
    |||| |||||||||||||||||||||||    
T  3015105 taacattagcacaatcagttgtcaagtc 3015078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 7095814 - 7095700
Alignment:
Q  226 cacaatcaagaccttctttcccttctttgcagtgtttggcaaataagccagttggatattttccatgaagatttatgtaactaaacataacgttagcaca 325  Q
    ||||||||||||||||||| ||||||||||| || || ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |||    
T  7095814 cacaatcaagaccttcttttccttctttgcattgattagcaaataagccaggtggatattttccataaagatttatgtaactaaacataacattagaaca 7095715  T
Q  326 atcagttgtcaagtc 340  Q
    |||||||||||||||    
T  7095714 atcagttgtcaagtc 7095700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 8800427 - 8800541
Alignment:
Q  226 cacaatcaagaccttctttcccttctttgcagtgtttggcaaataagccagttggatattttccatgaagatttatgtaactaaacataacgttagcaca 325  Q
    ||||||||||||||||||| ||||||||||| || || ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |||    
T  8800427 cacaatcaagaccttcttttccttctttgcattgattagcaaataagccaggtggatattttccataaagatttatgtaactaaacataacattagaaca 8800526  T
Q  326 atcagttgtcaagtc 340  Q
    |||||||||||||||    
T  8800527 atcagttgtcaagtc 8800541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 340
Target Start/End: Complemental strand, 7106905 - 7106793
Alignment:
Q  228 caatcaagaccttctttcccttctttgcagtgtttggcaaataagccagttggatattttccatgaagatttatgtaactaaacataacgttagcacaat 327  Q
    ||||||||||||| |||||||||| |||| |   | |||||||| |||  |||||||||||||| |  ||||||||||| |||||||||   ||||||||    
T  7106905 caatcaagaccttttttcccttctctgcactcactagcaaataatccaagtggatattttccataagcatttatgtaaccaaacataactgcagcacaat 7106806  T
Q  328 cagttgtcaagtc 340  Q
    |||||||||||||    
T  7106805 cagttgtcaagtc 7106793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 8787725 - 8787837
Alignment:
Q  228 caatcaagaccttctttcccttctttgcagtgtttggcaaataagccagttggatattttccatgaagatttatgtaactaaacataacgttagcacaat 327  Q
    ||||||||||||| |||||||||| |||| |   | |||||||| |||  |||||||||||||| |  ||||||||||| |||||||||   ||||||||    
T  8787725 caatcaagaccttttttcccttctctgcactcactagcaaataatccaagtggatattttccataagcatttatgtaaccaaacataactgcagcacaat 8787824  T
Q  328 cagttgtcaagtc 340  Q
    |||||||||||||    
T  8787825 cagttgtcaagtc 8787837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 30453618 - 30453731
Alignment:
Q  61 cttacatagccacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatttaacatcttta 160  Q
    |||||||||  ||||||||||| ||||||||||||  ||||||| || ||||| ||||| |||| |||||| |||||  | | |||||| || ||| |||    
T  30453618 cttacatagatacaaatacaaacaaaattatttag--gcacacacaataatgaaaaaaactaaaagataaataaattagtcaaatcattcaatatcatta 30453715  T
Q  161 aattattttatcttta 176  Q
    || |||||||||||||    
T  30453716 aactattttatcttta 30453731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 17793628 - 17793549
Alignment:
Q  58 aggcttacatagccacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaatt 137  Q
    |||||||||||||||  ||||||||||||||||||| | |  || || ||||||||||||||||||||||||||||||||    
T  17793628 aggcttacatagccattaatacaaataaaattatttggacaaacgcacaacaatgataaaaattaaatgataaagaaatt 17793549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 42560577 - 42560474
Alignment:
Q  72 acaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatttaacatctttaaattattttat 171  Q
    ||||| |||||||||||||||| |||||||||| ||||||||  |||||||||||||||| ||||  || |||||||| || ||| |||||  | |||||    
T  42560577 acaaacacaaataaaattatttgggcgcacacacaacaatgaagaaaattaaatgataaataaatcaatcacatcattcaaaatcattaaaccaatttat 42560478  T
Q  172 cttt 175  Q
    ||||    
T  42560477 cttt 42560474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 43362170 - 43362081
Alignment:
Q  61 cttacatagccacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcattt 150  Q
    |||||||||  ||||| |||||| |||||||||  ||||||||| ||||| || ||||||||||||||||| |||||  | |||||||||    
T  43362170 cttacatagatacaaacacaaatcaaattatttgagcgcacacacaacaaagaaaaaaattaaatgataaataaattagtcacatcattt 43362081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 39791501 - 39791434
Alignment:
Q  82 ataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatt 149  Q
    |||||||||||||||| || | ||| |||||| ||||||||||||||||| ||||| || ||||||||    
T  39791501 ataaaattatttaggcacatatatagcaatgaaaaaaattaaatgataaataaattaatcacatcatt 39791434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 36206426 - 36206558
Alignment:
Q  72 acaaatacaaataaaattatttaggcgcacacat----aacaatgataaaaattaaatgataaagaaattgattacatcatttaacatctttaaattatt 167  Q
    ||||| |||||||||||||||| | | |||||||    ||||||||  ||||||||| |||||| |||||  | |||||||| ||||||||||||  | |    
T  36206426 acaaacacaaataaaattatttggacacacacatgtacaacaatgaagaaaattaaaagataaataaattagtcacatcattcaacatctttaaaccaat 36206525  T
Q  168 ttatctttacaaagaaacatatctgtgtgtgagtg 202  Q
    ||||||||| ||||||| |||| | ||||||||||    
T  36206526 ttatcttta-aaagaaa-atatatttgtgtgagtg 36206558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 12837101 - 12837166
Alignment:
Q  61 cttacatagccacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatg 126  Q
    ||||||||| |||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||    
T  12837101 cttacatagacacaaacacaaataaaattatttgggcgcacacacaacaatgaaaaaaattaaatg 12837166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 47070755 - 47070669
Alignment:
Q  61 cttacatagccacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatt 149  Q
    ||||||||  |||||||||||||||||||||||  | ||||||| |||||||| |||||||||||||| || |||||||  ||||||||    
T  47070755 cttacatattcacaaatacaaataaaattattt--gagcacacacaacaatgacaaaaattaaatgatgaaaaaattgaccacatcatt 47070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 16364441 - 16364342
Alignment:
Q  72 acaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatttaacatctttaaattattttat 171  Q
    ||||| |||||||||||||||||| | ||||||  ||||||| ||||||||||| ||||| ||||| || ||||||||||||| |  ||||||| |||||    
T  16364441 acaaacacaaataaaattatttagacacacaca--acaatga-aaaaattaaataataaataaattaatcacatcatttaaca-ccataaattagtttat 16364346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 25724357 - 25724458
Alignment:
Q  61 cttacatagccacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatttaacatcttta 160  Q
    ||||||||| |||||| ||||||||||||| || ||| || | ||||||||||  |||||||| ||||||| ||||| || ||| ||||||||||| |||    
T  25724357 cttacatagacacaaacacaaataaaattagttgggcacatatataacaatgaagaaaattaagtgataaataaattaatcacaacatttaacatcatta 25724456  T
Q  161 aa 162  Q
    ||    
T  25724457 aa 25724458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 23595483 - 23595400
Alignment:
Q  72 acaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatttaacat 155  Q
    |||||||||||||||||||||||||  || ||||||||||||  |||| |||| |||||| |||||   ||||||||| |||||    
T  23595483 acaaatacaaataaaattatttaggtacatacataacaatgaagaaaaataaaagataaataaattagatacatcattcaacat 23595400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 41005275 - 41005178
Alignment:
Q  80 aaataaaattatttaggcgcacacataacaatgataaaaattaaatgat-aaagaaattgattacatcatttaacatctttaaattattttatcttta 176  Q
    ||||||||||||||  ||||||| |  ||||||| |||||||||| ||| ||| |||||  | |||||| |||||||| ||||| |||||| ||||||    
T  41005275 aaataaaattatttgagcgcacataccacaatgaaaaaaattaaaagataaaataaattagtcacatcacttaacatcattaaactattttctcttta 41005178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 16602728 - 16602627
Alignment:
Q  61 cttacatagccacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatttaacatcttta 160  Q
    |||||||||  | |||||||||||||||||||| ||| |||| |||||||| |  |||||||||||||||| ||||| || | |||||| || ||| |||    
T  16602728 cttacatagatataaatacaaataaaattatttgggcacacagataacaataaagaaaattaaatgataaataaattaatcatatcattcaatatcatta 16602629  T
Q  161 aa 162  Q
    ||    
T  16602628 aa 16602627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 5860239 - 5860344
Alignment:
Q  71 cacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatttaacatctttaaattatttta 170  Q
    ||||| |||||||||||||||||   |  ||||| ||||||||  ||| |||||||||||  ||| | || || |||||||||||| |||||| ||||||    
T  5860239 cacaactacaaataaaattatttgaacatacacacaacaatgaagaaatttaaatgataattaaactaatcacgtcatttaacatcattaaatcatttta 5860338  T
Q  171 tcttta 176  Q
    ||||||    
T  5860339 tcttta 5860344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 34409601 - 34409525
Alignment:
Q  80 aaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatttaacatc 156  Q
    |||||||||||||| |||||||||| |||||||   |||||||| ||||||| ||||| || |||||||| ||||||    
T  34409601 aaataaaattatttgggcgcacacacaacaatggagaaaattaattgataaataaattaatcacatcattcaacatc 34409525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 340017 - 339952
Alignment:
Q  72 acaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaatt 137  Q
    |||||||||||||||||||||| ||| |||| | |||||| |  |||||||||||||||| |||||    
T  340017 acaaatacaaataaaattatttgggcacacatacaacaataaagaaaattaaatgataaataaatt 339952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 9735267 - 9735343
Alignment:
Q  61 cttacatagccacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaatt 137  Q
    ||||| ||| |||||  |||||||||||||||||||   | | |||||||| | ||||||||||||||||| |||||    
T  9735267 cttacttagacacaatcacaaataaaattatttaggtatatatataacaataaaaaaaattaaatgataaataaatt 9735343  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 10383419 - 10383533
Alignment:
Q  61 cttacatagccacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaattgattacatcatttaacatcttta 160  Q
    |||||||||  ||||  |||||||||||||| | ||| |||| | |||||||| |||| |||||||||||| ||||| || || ||||| || ||| |||    
T  10383419 cttacatagatacaaccacaaataaaattatctgggcacacatacaacaatga-aaaacttaaatgataaataaattaatcacgtcattcaatatcatta 10383517  T
Q  161 aattattttatcttta 176  Q
    ||| | ||||||||||    
T  10383518 aatcaatttatcttta 10383533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 32026230 - 32026157
Alignment:
Q  61 cttacatagccacaaatacaaataaaattatttaggcgcacacataacaatgataaaaattaaatgataaagaaat 136  Q
    |||||||||  ||||| ||||||||||| |||| ||| ||||||  |||||||  |||||||||||||||| ||||    
T  32026230 cttacatagatacaaacacaaataaaataatttgggcacacaca--acaatgaagaaaattaaatgataaataaat 32026157  T

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Target: scaffold0360 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 14424 - 14478
Alignment:
Q  122 aaatgataaagaaattgattacatcatttaacatctttaaattattttatcttta 176  Q
    |||||||||  ||||| || |||||||| |||||| |||||||||||||||||||    
T  14424 aaatgataattaaattaatcacatcattcaacatcattaaattattttatcttta 14478  T

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