View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_38 (Length: 350)
Name: NF15789_low_38
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 32825087 - 32824769
Alignment:
| Q |
16 |
caatttgatccaatttgcattcacttgaagccacaacaaagccaataccttctgcattgcaatctatctccaacctgttggtttcagtgttcatctttaa |
115 |
Q |
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| T |
32825087 |
caatttgattcaatttgtattcacttgaagccacaacaaagccaacaccttctgcattgcaatctatctccaacctgttggtttcagtgttcatctttaa |
32824988 |
T |
|
| Q |
116 |
tcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcggtcactatttgaggaggaaaatctttgtttgcttcgaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824987 |
tcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcggtcactatttgaggaggaaaatctttgtttgcttcgaag |
32824888 |
T |
|
| Q |
216 |
aaatgaaccgtttttacgtagaaattgagtaccttgtctatatttgataagaacatggatttgttctcggtttgttttgatggaaaaatcattgaagttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824887 |
aaatgaaccgtttttacgtagaaattgagtaccttgtctatatttgataagaacatggatttgttctcggtttgttttgatggaaaaatcattgaagttt |
32824788 |
T |
|
| Q |
316 |
tgtggattgtcaccttcat |
334 |
Q |
| |
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||||||||||||||||||| |
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| T |
32824787 |
tgtggattgtcaccttcat |
32824769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 32808392 - 32808074
Alignment:
| Q |
16 |
caatttgatccaatttgcattcacttgaagccacaacaaagccaataccttctgcattgcaatctatctccaacctgttggtttcagtgttcatctttaa |
115 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32808392 |
caatttgattcaatttgtattcacttgaagccacaacaaagccaacaccttctgcattgcaatctatctccaacctgttggtttcagtgttcatctttaa |
32808293 |
T |
|
| Q |
116 |
tcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcggtcactatttgaggaggaaaatctttgtttgcttcgaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32808292 |
tcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcggtcactatttgaggaggaaaatctttgtttgcttcgaag |
32808193 |
T |
|
| Q |
216 |
aaatgaaccgtttttacgtagaaattgagtaccttgtctatatttgataagaacatggatttgttctcggtttgttttgatggaaaaatcattgaagttt |
315 |
Q |
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|||||||||||||| || | |||||||| || ||||||| ||||||||||||| |||||| || ||| ||||||||||||| |||||||||||||||| |
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| T |
32808192 |
aaatgaaccgttttcacatgaaaattgagaactctgtctatgtttgataagaacaaggatttcttttcgatttgttttgatgggaaaatcattgaagttt |
32808093 |
T |
|
| Q |
316 |
tgtggattgtcaccttcat |
334 |
Q |
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||||||||||||||||||| |
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| T |
32808092 |
tgtggattgtcaccttcat |
32808074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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