View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_39 (Length: 342)
Name: NF15789_low_39
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 30463378 - 30463682
Alignment:
| Q |
20 |
cacacttccaaacgaaacatataaaaacaaaatctttttccaactctttttactcccccaaaattgtggttgacatcaaatctccttctctacatactct |
119 |
Q |
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| T |
30463378 |
cacacttccaaacgaaacacataaaaacaaaatctttttccaactctttttactcccccaaaattgtggttgacatcaaatctccttctctacatactct |
30463477 |
T |
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| Q |
120 |
cttggcaccacttccaaaaatggcaacataaatcatatcattgctacaatttcttcactcaccaaacactccattatttgaacacacgttctctctatcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30463478 |
cttggcaccacttccaaaaatggcaacataaatcatatcattgctacaatttcttcactcaccaaactctccattatttgaacacacgttctctctatcc |
30463577 |
T |
|
| Q |
220 |
ttcacaaaactatcttacaatataaaccctataccatttctaagcttttctca-nnnnnnnnctcaattttcatgtacataataagcattgcttaacgtg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |
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| T |
30463578 |
ttcacaaaactatcttacaatataaaccctataccatttctaagcttttctcatttttttttctcaattttcatgtac---ataagcattgcttaatgtg |
30463674 |
T |
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| Q |
319 |
caaccaaa |
326 |
Q |
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|||||||| |
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| T |
30463675 |
caaccaaa |
30463682 |
T |
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