View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_low_40 (Length: 340)

Name: NF15789_low_40
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_low_40
NF15789_low_40
[»] chr1 (2 HSPs)
chr1 (24-333)||(11325774-11326084)
chr1 (24-333)||(11483795-11484105)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 24 - 333
Target Start/End: Complemental strand, 11326084 - 11325774
Alignment:
Q  24 atggttattgtcttaataattt-gacggtgccaaattacgaggtagtagattttggctttggttgatttacattgtaatgttattgaactggaatatatg 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11326084 atggttattgtcttaataattttgacggtgccaaattacgaggtagtagattttggctttggttgatttacattgtaatgttattgaactggaatatatg 11325985  T
Q  123 caagaacgaacgataagattattctttggtctatcgaccattttcttcctaggtttaagaatctcttctttggtcccttaatgatgacactaggattctt 222  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11325984 caggaacgaacgataagattattctttggtctatcgaccattttcttcctaggtttaagaatctcttctttggttccttaatgatgacactaggattctt 11325885  T
Q  223 ttaactcgtcttcagtggagattggaagaaatattatgcaggtgatgaaagaaggcttcgagacgatagtttcttcaaataaccctcaatcggaattttt 322  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11325884 ttaactcatcttcagtggagattggaagcaatattatgcaggtgatgaaagaaggcttcaagacgatagtttcttcaaataaccctcaatcggaattttt 11325785  T
Q  323 gcttcatctca 333  Q
    |||| ||||||    
T  11325784 gctttatctca 11325774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 24 - 333
Target Start/End: Complemental strand, 11484105 - 11483795
Alignment:
Q  24 atggttattgtcttaataattt-gacggtgccaaattacgaggtagtagattttggctttggttgatttacattgtaatgttattgaactggaatatatg 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11484105 atggttattgtcttaataattttgacggtgccaaattacgaggtagtagattttggctttggttgatttacattgtaatgttattgaactggaatatatg 11484006  T
Q  123 caagaacgaacgataagattattctttggtctatcgaccattttcttcctaggtttaagaatctcttctttggtcccttaatgatgacactaggattctt 222  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11484005 caggaacgaacgataagattattctttggtctatcgaccattttcttcctaggtttaagaatctcttctttggttccttaatgatgacactaggattctt 11483906  T
Q  223 ttaactcgtcttcagtggagattggaagaaatattatgcaggtgatgaaagaaggcttcgagacgatagtttcttcaaataaccctcaatcggaattttt 322  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11483905 ttaactcatcttcagtggagattggaagcaatattatgcaggtgatgaaagaaggcttcaagacgatagtttcttcaaataaccctcaatcggaattttt 11483806  T
Q  323 gcttcatctca 333  Q
    |||| ||||||    
T  11483805 gctttatctca 11483795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University