View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_41 (Length: 338)
Name: NF15789_low_41
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 3481154 - 3480839
Alignment:
| Q |
15 |
aggaagttgagcttaaaaagtgtgagatacttgaagacaataatagattcgaggaaggaagctacggtggagaaaaacatccggattcaatatcggatga |
114 |
Q |
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| T |
3481154 |
aggaagttgagcttaaaaagtgtgagatacttgaagacaataatagattcgaggaaggaagctacggtggagaaaaacatccggattcaatatcggacta |
3481055 |
T |
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| Q |
115 |
tgttgcaataagggaaaacgacgtcattcaaaacaaaagagttgaaattgaggctgagtatgattccgttgtttactggaaacatcgagcaatcgaattg |
214 |
Q |
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| T |
3481054 |
tgttgcaataagggaaaacgacgtcattcaaaacaaaagagttgaaattgaggctgagtatgattccgttgtttactggaaacatcgagcgatcgaattg |
3480955 |
T |
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| Q |
215 |
gaaagacagttggaggcaagttataggagagaggagatattaaaggaaaagctgcaagaaagtatagaggctattcaaagacaatcatcacctgtggagg |
314 |
Q |
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| T |
3480954 |
gaaagacagttggaggcaagttataggagagaggagatattaaaggaaaagctgcaagaaagtatagaggctattcaaagacaatcatcacctgtggagg |
3480855 |
T |
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| Q |
315 |
aactgtcacaggttct |
330 |
Q |
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| T |
3480854 |
aactgtcacagattct |
3480839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 141 - 330
Target Start/End: Complemental strand, 3456641 - 3456452
Alignment:
| Q |
141 |
ttcaaaacaaaagagttgaaattgaggctgagtatgattccgttgtttactggaaacatcgagcaatcgaattggaaagacagttggaggcaagttatag |
240 |
Q |
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| T |
3456641 |
ttcagaacaagagaattgaaattgaggctgagtatgatactgttgtttactggaaacaacggtcgcaagattttgaaaaacagttggaagctagtattcg |
3456542 |
T |
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| Q |
241 |
gagagaggagatattaaaggaaaagctgcaagaaagtatagaggctattcaaagacaatcatcacctgtggaggaactgtcacaggttct |
330 |
Q |
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| T |
3456541 |
gagggaggatatattaaaggagaaattgcaagaaagtatagagactattgaaagacaatcatcacctgtggaggaactgtcacagattct |
3456452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 48694174 - 48694235
Alignment:
| Q |
143 |
caaaacaaaagagttgaaattgaggctgagtatgattccgttgtttactggaaacatcgagc |
204 |
Q |
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| T |
48694174 |
caaaataagagagttgaaattgatgccgagtatgatactgttgtgtactggaaacagcgagc |
48694235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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