View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_46 (Length: 297)
Name: NF15789_low_46
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 45052388 - 45052117
Alignment:
| Q |
8 |
ttcttatgttggattacataaatttatagatatannnnnnnnnnngtagcaattatagtacataatggctaagcaaagatactaatagagagtccctacg |
107 |
Q |
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| T |
45052388 |
ttcttatgttggattacataaatttatagatatattattttttt-gtagcaattatagtacataatggctaagcaaatatactaatagagagtccctacg |
45052290 |
T |
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| Q |
108 |
catcaagacattgagctcattgagaaaagagaaaaaagtttcagaaattgttttgttccctgatgaagatgaaaggagaaaagtgaatgtaaagttttca |
207 |
Q |
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| T |
45052289 |
catcaagacattgagctcattaagaaaagagaaaaa-gtttcagaaattgttttgttccttgatgaagatgaaaggagaaaagtgaatgtaaagttttca |
45052191 |
T |
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| Q |
208 |
aacttcttattgagagagcaatgctgaatctttgatagagataagatggatctaaatatatgatagttctttcat |
282 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45052190 |
aacttcttattgagagagcaatgctcaatc-ttgatagagataagatggatctaaaaatatgatagttctttcat |
45052117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 40697833 - 40697741
Alignment:
| Q |
59 |
attatagtacataatggctaagcaaagatactaatagagagtccctacgcatcaagacattgagctcattgagaaaagagaaaaaagtttcagaa |
153 |
Q |
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| T |
40697833 |
attataatacataatggctaagtgaagatactagtagag--tcccttcacatgaagacattgaactcactgaggaaagagaaaaatgttttagaa |
40697741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 15319528 - 15319583
Alignment:
| Q |
98 |
agtccctacgcatcaagacattgagctcattgagaaaagagaaaaaagtttcagaa |
153 |
Q |
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| T |
15319528 |
agtccctccacatcaagacattgagctcactgtggaaagagaaaaatgtttcagaa |
15319583 |
T |
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