View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_47 (Length: 293)
Name: NF15789_low_47
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 34 - 276
Target Start/End: Original strand, 6281721 - 6281963
Alignment:
| Q |
34 |
ataatacttgcttatttatttagaaaattccatcactcctagggcagaaaaggcaagacaaacaacctcaaaactagaaaatccagaacatttgcataac |
133 |
Q |
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| T |
6281721 |
ataatacttgcttatttatttagaaaattccatcactcctagggcagaaaaggcaagacaaacaacctcaaaactagaaaatccagaacatttgcataac |
6281820 |
T |
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| Q |
134 |
ttttcaaattctttctctgttctttcaacaccactatccaagaacatgaggttgtcaaagctagttatcatcttatctgcttttgtatgctgaatttctt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6281821 |
ttttcaaattctttctctgttctttcaacaccactatccaagaacatgaggttgtcaaagctagttatcatcttatctgcttttgtatgctgaatttctt |
6281920 |
T |
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| Q |
234 |
gaggcattatgaagtccacaacaatcactttcccatgttgtgg |
276 |
Q |
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| T |
6281921 |
gaggcataatgaagtccacaacaatcactttcccatgttgtgg |
6281963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 6277390 - 6277492
Alignment:
| Q |
58 |
aaattccatcactcctagggcagaaaaggcaagacaaacaacctcaaaactagaaaatccagaacatttgcataacttttcaaattctttctctgttctt |
157 |
Q |
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||||||||||||||| | | |||||| || | ||||||| |||||||||||||||||||| | |||||| || | ||||||||||||| ||||||| |
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| T |
6277390 |
aaattccatcactcccaaagaagaaaaagccaagcaaacaatttcaaaactagaaaatccagagcttttgcacaaactctcaaattctttctttgttctt |
6277489 |
T |
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| Q |
158 |
tca |
160 |
Q |
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| T |
6277490 |
tca |
6277492 |
T |
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