View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_48 (Length: 290)
Name: NF15789_low_48
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 9670544 - 9670281
Alignment:
| Q |
11 |
taattctttgtaggtggtttgtttgctatttatggtgtaccattttatctagcttaaggtcctccctaagtgatctcttgaatccttctcaaaaggtgta |
110 |
Q |
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| T |
9670544 |
taattctttgtaggtggtttgtttgctatttatggtgtaccattttatcaagcttaaggtcctccctaagtgatctcttgaatccttctcaaaaggtgta |
9670445 |
T |
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| Q |
111 |
gagagtgttcacttatggtattgatgctagataatttgaataaaatttctatctaataattgagaaaaaatttgtggagtagcaatttgatccgcacact |
210 |
Q |
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| T |
9670444 |
gagagtgttcacttatggtattgatgccagataatttgaataaaatttctatctaattattgagaaaaaatttgtggagtagcaatttgatccgcacact |
9670345 |
T |
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| Q |
211 |
c-atgctcctgcatatcattacctatttgataagaggtactccgggtaccttttttctactttg |
273 |
Q |
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| T |
9670344 |
ctatgctcctgcatatcattacctatttgataagaggtactccgggtaccttttttctactttg |
9670281 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 150
Target Start/End: Original strand, 9241286 - 9241397
Alignment:
| Q |
37 |
tatttatggtgtaccattttatctagcttaaggtcctccctaagtgatctcttgaatccttctcaaaaggtgtagagagtgttcacttatggtattgatg |
136 |
Q |
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| T |
9241286 |
tatttttggtgtaaccttttatctaggtcaagctcctcactaactggcctcttgaagccttcttaaaagacg--gagagtgttcacttatggtgttgatg |
9241383 |
T |
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| Q |
137 |
ctagataatttgaa |
150 |
Q |
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| T |
9241384 |
ctagatactttgaa |
9241397 |
T |
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