View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_56 (Length: 271)
Name: NF15789_low_56
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_56 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 34112601 - 34112351
Alignment:
| Q |
1 |
gattcagaagaagaactgaaagaagcgtttagagtgttcgacaaggatcagaatggattcatttctgctgctgaacttcgccatgtaatgaccaaccttg |
100 |
Q |
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| T |
34112601 |
gattcagaagaagaactgaaagaagcgtttagagtgttcgacaaggatcagaatggattcatttctgctgctgaactgcgccatgtaatgaccaaccttg |
34112502 |
T |
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| Q |
101 |
gtgaaaagcttactgatgaagaagttgatgaaatgattcgagaggctgatgttgatggtgatggtcaaattaattatgatgagtttgttaaggttatgat |
200 |
Q |
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| T |
34112501 |
gtgaaaagcttactgatgaagaagttgatgaaatgattcgagaggctgatgttgatggtgatggtcaaattaattatgatgagtttgttaaggttatgat |
34112402 |
T |
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| Q |
201 |
ggccaagtgagattaattatcaaaccatacaatactactactacaccttat |
251 |
Q |
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| T |
34112401 |
ggccaagtgagattaattatcaaaccatacaatactactactacaccttat |
34112351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 8921295 - 8921108
Alignment:
| Q |
16 |
ctgaaagaagcgtttagagtgttcgacaaggatcagaatggattcatttctgctgctgaacttcgccatgtaatgaccaaccttggtgaaaagcttactg |
115 |
Q |
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| T |
8921295 |
ctgaaagaagcgtttcgggtttttgacaaggatcagaacggtttcatttctgctgctgagcttcgccatgtgatgaccaaccttggcgagaagctcaccg |
8921196 |
T |
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| Q |
116 |
atgaagaagttgatgaaatgattcgagaggctgatgttgatggtgatggtcaaattaattatgatgagtttgttaaggttatgatggc |
203 |
Q |
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| T |
8921195 |
atgaagaagtcgatgagatgatccgtgaggctgatgttgatggtgatggtcaaataaactacgaggaattcgttaaggtcatgatggc |
8921108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 35835 - 35625
Alignment:
| Q |
1 |
gattcagaagaagaactgaaagaagcgtttagagtgttcgacaaggatcagaatggattcatttctgctgctgaacttcgccatgtaatgaccaaccttg |
100 |
Q |
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| T |
35835 |
gattcagaggaggaacttaaggaagcctttcgtgtgtttgacaaggatcagaacggttttatttctgctgctgagctccgtcatgttatgacaaatcttg |
35736 |
T |
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| Q |
101 |
gtgaaaagcttactgatgaagaagttgatgaaatgattcgagaggctgatgttgatggtgatggtcaaattaattatgatgagtttgttaaggttatgat |
200 |
Q |
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| T |
35735 |
gtgagaagttgacagacgaagaagttgatgagatgattcgtgaagccgatgttgatggtgatgggcagatcaactacgaggagtttgtcaaagttatgat |
35636 |
T |
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| Q |
201 |
ggccaagtgag |
211 |
Q |
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| T |
35635 |
ggccaagtgag |
35625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 38317362 - 38317185
Alignment:
| Q |
34 |
gtgttcgacaaggatcagaatggattcatttctgctgctgaacttcgccatgtaatgaccaaccttggtgaaaagcttactgatgaagaagttgatgaaa |
133 |
Q |
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| T |
38317362 |
gtgtttgacaaggatcaaaatggtttcatctctgcagctgagctccgtcatgtcatgacaaatctcggagagaagctgactgatgaagaagttgacgaga |
38317263 |
T |
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| Q |
134 |
tgattcgagaggctgatgttgatggtgatggtcaaattaattatgatgagtttgttaaggttatgatggccaagtgag |
211 |
Q |
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| T |
38317262 |
tgattcgcgaggctgatgttgatggtgatggtcagatcaactatgaggagtttgtcaaagtcatgatggctaagtgag |
38317185 |
T |
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