View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_low_57 (Length: 264)

Name: NF15789_low_57
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_low_57
NF15789_low_57
[»] chr7 (12 HSPs)
chr7 (15-246)||(22879152-22879383)
chr7 (15-246)||(22813542-22813773)
chr7 (15-246)||(22896784-22897015)
chr7 (15-243)||(22892468-22892696)
chr7 (109-243)||(22887907-22888041)
chr7 (109-239)||(22803945-22804075)
chr7 (109-243)||(22829640-22829774)
chr7 (109-239)||(22870443-22870573)
chr7 (109-243)||(22808229-22808363)
chr7 (109-243)||(22874537-22874671)
chr7 (109-243)||(22838661-22838795)
chr7 (172-246)||(22912331-22912405)
[»] chr1 (1 HSPs)
chr1 (128-243)||(21151971-21152086)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 22879152 - 22879383
Alignment:
Q  15 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggtt 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         || |||    
T  22879152 cagagagaagtgaatcagcaagagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaaatatttgtt 22879251  T
Q  115 cccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta 214  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  22879252 cccaaaagttaatccagaagaagataaactaggcaaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgtctcatacctggtcta 22879351  T
Q  215 gccaaaggttctgaatgtgaacacaacaaacc 246  Q
    ||||||||||||||||||||||||||||||||    
T  22879352 gccaaaggttctgaatgtgaacacaacaaacc 22879383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 22813542 - 22813773
Alignment:
Q  15 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggtt 114  Q
    |||||||||||||||||| |||||| ||||| ||||| |||||| |||||||||| ||||||||||| |||||||||||||||||         |||||     
T  22813542 cagagagaagtgaatcagaaatagaaacagaagtatgtgacattgtcttgtccatggaagaaggatacgacaaaggaaagtcctcaaaatattcttggta 22813641  T
Q  115 cccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta 214  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  22813642 cccaaaagttaatccagaagaagataaactaagcgaaggcaaatctggcaaaggtatatcccgctccaaatactgcacaacttgtctcatacctggtcta 22813741  T
Q  215 gccaaaggttctgaatgtgaacacaacaaacc 246  Q
    ||||||||||||||||||||||||||||||||    
T  22813742 gccaaaggttctgaatgtgaacacaacaaacc 22813773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 22896784 - 22897015
Alignment:
Q  15 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggtt 114  Q
    ||||||||||||||||||||||||||||||| || || |||||| | ||| ||||||||||||||||||||||||||||||||||         |||||     
T  22896784 cagagagaagtgaatcagcaatagacacagaggtgtgtgacattgtgttgcccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 22896883  T
Q  115 cccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta 214  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||||| |||||||    
T  22896884 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttgtctcatacctggtcta 22896983  T
Q  215 gccaaaggttctgaatgtgaacacaacaaacc 246  Q
    ||||||||||||||||||||||||||||||||    
T  22896984 gccaaaggttctgaatgtgaacacaacaaacc 22897015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 22892468 - 22892696
Alignment:
Q  15 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcnnnnnnnntttggtt 114  Q
    ||||||||| ||| || |||||||||||||| || || |||||| | ||| ||||||| ||||||||||||||||||||||||||         |||||     
T  22892468 cagagagaattgagtcggcaatagacacagaagtctgtgacattgtgttgcccatagaggaaggataagacaaaggaaagtcctcaaaaaattcttggta 22892567  T
Q  115 cccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  22892568 cccaaaagttaatccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgtctcatacatggtcta 22892667  T
Q  215 gccaaaggttctgaatgtgaacacaacaa 243  Q
    |||||||||||||||||||||||||||||    
T  22892668 gccaaaggttctgaatgtgaacacaacaa 22892696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 22887907 - 22888041
Alignment:
Q  109 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 208  Q
    ||||| |||||||||||| |||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  22887907 ttggtacccaaaagttaaaccagaagaagataaactaagcgaagaaaaatctggcaaaggtgtatccctctccaaatactgtacaacttgtctcatactt 22888006  T
Q  209 ggtctagccaaaggttctgaatgtgaacacaacaa 243  Q
    |||||||||||||| ||||||||||||||||||||    
T  22888007 ggtctagccaaaggctctgaatgtgaacacaacaa 22888041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 22803945 - 22804075
Alignment:
Q  109 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 208  Q
    ||||| |||||||||||||||| |  |||||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||    
T  22803945 ttggtgcccaaaagttaatccataggaagataaactaagcaatgacaaatctggtaaaggtaaatccctctccaaatactgcacaacttgtctcatactt 22804044  T
Q  209 ggtctagccaaaggttctgaatgtgaacaca 239  Q
    |||||||||||||| ||||||||||||||||    
T  22804045 ggtctagccaaaggctctgaatgtgaacaca 22804075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 22829640 - 22829774
Alignment:
Q  109 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 208  Q
    ||||| |||||||  ||| |||||| |||||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |    
T  22829640 ttggtacccaaaaaataaaccagaagaagataaactaagcgaaaacaaatatggcaaaggtatatccctctccaaatactgcacaacttgtctcatacct 22829739  T
Q  209 ggtctagccaaaggttctgaatgtgaacacaacaa 243  Q
    |||||||||||||||||||||||||||||||||||    
T  22829740 ggtctagccaaaggttctgaatgtgaacacaacaa 22829774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 22870443 - 22870573
Alignment:
Q  109 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 208  Q
    ||||| |||||||||||||||| |  |||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  22870443 ttggtgcccaaaagttaatccataggaagataaactaagcaatgacaaagctggtaaaggtatatccctctccaaatactgcacaacttgtctcatactt 22870542  T
Q  209 ggtctagccaaaggttctgaatgtgaacaca 239  Q
    |||||||||||||| ||||||||||||||||    
T  22870543 ggtctagccaaaggctctgaatgtgaacaca 22870573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 22808229 - 22808363
Alignment:
Q  109 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 208  Q
    ||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  22808229 ttggtacccaaaagttaaaccagaagaagataaactaagcgaagacaaatctggcaaagctatatccctctccaaatactgcacaacttgtctcatactt 22808328  T
Q  209 ggtctagccaaaggttctgaatgtgaacacaacaa 243  Q
    |||||| ||| ||| ||||||||  ||||||||||    
T  22808329 ggtctaaccagaggctctgaatgcaaacacaacaa 22808363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 22874537 - 22874671
Alignment:
Q  109 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 208  Q
    ||||| |||||||||||| ||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||    
T  22874537 ttggtacccaaaagttaaaccaaaagaagataaactaagcgaagaaaaatctggcaaaggtatatccctctccaaatactgcacaacttgcctcatgctt 22874636  T
Q  209 ggtctagccaaaggttctgaatgtgaacacaacaa 243  Q
    |||||||||||||| |||||||| |||||||||||    
T  22874637 ggtctagccaaaggctctgaatgagaacacaacaa 22874671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 22838661 - 22838795
Alignment:
Q  109 ttggttcccaaaagttaatccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatactt 208  Q
    ||||| |||||||||||| ||| ||  ||||||||||||| ||||||||||||| || ||||||||| ||||||||||| |||||||||| |||||||||    
T  22838661 ttggtacccaaaagttaaaccaaaagtagataaactaagcgaagacaaatctggaaagggtatatccgtctccaaatactgcacaacttgcctcatactt 22838760  T
Q  209 ggtctagccaaaggttctgaatgtgaacacaacaa 243  Q
    |||||||||||||| |||||||| |||||||||||    
T  22838761 ggtctagccaaaggctctgaatgagaacacaacaa 22838795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 22912331 - 22912405
Alignment:
Q  172 atccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctgaatgtgaacacaacaaacc 246  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||  ||  |||||||||| ||||||||    
T  22912331 atccctctccaaatacctcaaaacttgtctcatacttggtctagccaaagcctcacaatgtgaacataacaaacc 22912405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 21152086 - 21151971
Alignment:
Q  128 ccagaataagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctg 227  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || |    
T  21152086 ccagaagaagataaactaagtgaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgcctcatacttggtctagccaaaggctcgg 21151987  T
Q  228 aatgtgaacacaacaa 243  Q
    ||||||||||||||||    
T  21151986 aatgtgaacacaacaa 21151971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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