View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_6 (Length: 574)
Name: NF15789_low_6
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 20 - 564
Target Start/End: Original strand, 46873857 - 46874401
Alignment:
| Q |
20 |
ggacataccttcgatctgaagtgtccatgatacgtatgttaatgttgactaactttatgttgttttgttgctgtttaatagtggaatggtggacaagtta |
119 |
Q |
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| T |
46873857 |
ggacataccttcgatctgaagtgtccatgatacatatgctaatgttgactaactttatgttgttttgttgctgtttaatagtggaatggtggacaagtta |
46873956 |
T |
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| Q |
120 |
gctatgtgattcggaaggccaatacttcatggatacaaccaaaatggggtgcctcagtagtgcaattagaccctaatacttgggttcttgagtatcaaag |
219 |
Q |
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| T |
46873957 |
gctatgtgattcggaaggccaatacttcatggatacaaccaaaatggggtgcctcggtagtgcaattagaccctaatacttgggttcttgagtatcaaag |
46874056 |
T |
|
| Q |
220 |
gagctctatgattgatggtaaaggattgttttctacagcattggagtttatcaagtataggatttcaaggattgtcagcaagatgaagaaagatttctgg |
319 |
Q |
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| T |
46874057 |
gagctctatgattgattgtaaaggattgttttctacagcattggagtttatcaagtataggatttcaaggattgtcagcaagatgaagaaagatttctgg |
46874156 |
T |
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| Q |
320 |
cagtttgtggcatttgaagataatcatcaatacaattggttcacaacaacaaactatgggtctaagaccccaacttgaagtcaatagtagattgtggagt |
419 |
Q |
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| T |
46874157 |
cagtttgtggcatttgaagataatcatcaatacaattggttcacaacaacaaactatgggtctaagaccccaacttgaagtcaatagtagattgtggagt |
46874256 |
T |
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| Q |
420 |
taaattattctcaatcagcgcaaagccctcatttcttgtgaggagctccaacttttttacttgtaaaggttcttttatatctttgattttatctgtcaat |
519 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46874257 |
taaattattctcaatcagtgcaaagccctcatttcttgtgaggagttccaacttttttacttgtaaaggttcttttatatctttgattttatctgtcaat |
46874356 |
T |
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| Q |
520 |
tcttaatcaacaatagattttgaacctcttttgtcatcccctttg |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46874357 |
tcttaatcaacaatagattttgaacctcttttgtcatcccttttg |
46874401 |
T |
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