View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15789_low_60 (Length: 255)

Name: NF15789_low_60
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15789_low_60
NF15789_low_60
[»] chr5 (2 HSPs)
chr5 (12-188)||(1538087-1538263)
chr5 (190-240)||(39949083-39949133)
[»] chr7 (4 HSPs)
chr7 (190-240)||(12642593-12642643)
chr7 (190-240)||(42709226-42709276)
chr7 (194-240)||(43702633-43702679)
chr7 (74-130)||(29763833-29763889)
[»] chr3 (1 HSPs)
chr3 (190-240)||(33516698-33516748)
[»] chr1 (4 HSPs)
chr1 (190-240)||(43669651-43669701)
chr1 (190-240)||(46900151-46900201)
chr1 (74-135)||(16234306-16234367)
chr1 (74-135)||(29706714-29706776)
[»] chr8 (3 HSPs)
chr8 (190-232)||(41741096-41741138)
chr8 (92-137)||(12655918-12655963)
chr8 (74-134)||(14228706-14228766)
[»] chr4 (1 HSPs)
chr4 (201-240)||(25107611-25107650)
[»] chr2 (2 HSPs)
chr2 (74-136)||(4114433-4114495)
chr2 (74-136)||(18508075-18508137)
[»] chr6 (1 HSPs)
chr6 (74-142)||(16368058-16368127)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 1538087 - 1538263
Alignment:
Q  12 ataggtagatgtcatacaataaagtatgagcaacaaggatgtttataacacaataactcttggtatgagaaagaaggttatacaaaagttattataaaat 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| |||||||||||| |||||||||||| |||||||    
T  1538087 ataggtagatgtcatacaataaagtatgagcaacaagtatgtttataacacaataacccttagtattagaaagaaggttgtacaaaagttatcataaaat 1538186  T
Q  112 tgttcaacaaatatcatttttcttaaattaattaataactattctgctatttattttcttatacacaactttattat 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1538187 tgttcaacaaatatcatttttcttaaattaattaataactattcttctatttattttcttatacacaactttattat 1538263  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 39949133 - 39949083
Alignment:
Q  190 aaattggatcatctgcagcactttctctcctgcactccctgctaccctttt 240  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  39949133 aaattggatcacctgcagcactttctctcctgcactccctgctgccctttt 39949083  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 12642643 - 12642593
Alignment:
Q  190 aaattggatcatctgcagcactttctctcctgcactccctgctaccctttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12642643 aaattggatcatctgcagcactttctctcctgcactccctgctgccctttt 12642593  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 42709226 - 42709276
Alignment:
Q  190 aaattggatcatctgcagcactttctctcctgcactccctgctaccctttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42709226 aaattggatcatctgcagcactttctctcctgcactccctgctgccctttt 42709276  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 43702679 - 43702633
Alignment:
Q  194 tggatcatctgcagcactttctctcctgcactccctgctaccctttt 240  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  43702679 tggatcatctgcagcattttctctcctgcactccctgctgccctttt 43702633  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 29763889 - 29763833
Alignment:
Q  74 gtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcattt 130  Q
    ||||||||||||| ||| |||||||||||| | ||||| |||  |||||||||||||    
T  29763889 gtatgagaaagaaagttgtacaaaagttatcacaaaatggttgtacaaatatcattt 29763833  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 33516698 - 33516748
Alignment:
Q  190 aaattggatcatctgcagcactttctctcctgcactccctgctaccctttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33516698 aaattggatcatctgcagcactttctctcctgcactccctgctgccctttt 33516748  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 43669651 - 43669701
Alignment:
Q  190 aaattggatcatctgcagcactttctctcctgcactccctgctaccctttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43669651 aaattggatcatctgcagcactttctctcctgcactccctgctgccctttt 43669701  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 46900151 - 46900201
Alignment:
Q  190 aaattggatcatctgcagcactttctctcctgcactccctgctaccctttt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46900151 aaattggatcatctgcagcactttctctcctgcactccctgctgccctttt 46900201  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 16234306 - 16234367
Alignment:
Q  74 gtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcatttttctt 135  Q
    |||||||| ||||||||||||||||||| | ||||||| | |  ||||||||||||||||||    
T  16234306 gtatgagagagaaggttatacaaaagttgtcataaaatggatgtacaaatatcatttttctt 16234367  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 29706714 - 29706776
Alignment:
Q  74 gtatgagaaagaaggttata-caaaagttattataaaattgttcaacaaatatcatttttctt 135  Q
    |||||||| ||||||||||| |||||||||| ||||||| |||  ||||||||||||| ||||    
T  29706714 gtatgagagagaaggttataacaaaagttatcataaaatggttgtacaaatatcatttctctt 29706776  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 41741138 - 41741096
Alignment:
Q  190 aaattggatcatctgcagcactttctctcctgcactccctgct 232  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41741138 aaattggatcatctgcagcactttctctcctgcactccctgct 41741096  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 12655963 - 12655918
Alignment:
Q  92 tacaaaagttattataaaattgttcaacaaatatcatttttcttaa 137  Q
    |||||||||||||||||||| |||  ||||||||||||| ||||||    
T  12655963 tacaaaagttattataaaatggttgtacaaatatcatttctcttaa 12655918  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 14228766 - 14228706
Alignment:
Q  74 gtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcatttttct 134  Q
    |||||||| |||| ||| |||||||||||| | ||||| |||  |||||||||||||||||    
T  14228766 gtatgagagagaaagttgtacaaaagttatcacaaaatagttgtacaaatatcatttttct 14228706  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 25107650 - 25107611
Alignment:
Q  201 tctgcagcactttctctcctgcactccctgctaccctttt 240  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  25107650 tctgcaacactttctctcctgcactccctgctgccctttt 25107611  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 4114433 - 4114495
Alignment:
Q  74 gtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcatttttctta 136  Q
    |||||||| |||| |||||||||||||||| ||||||| |||  |||||||| |||| |||||    
T  4114433 gtatgagagagaaagttatacaaaagttataataaaatggttgtacaaatataatttctctta 4114495  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 18508137 - 18508075
Alignment:
Q  74 gtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcatttttctta 136  Q
    |||||||| |||| |||||||||||||||| ||||||| | |  ||||||||||||| |||||    
T  18508137 gtatgagagagaatgttatacaaaagttatcataaaatggatgtacaaatatcatttctctta 18508075  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 16368058 - 16368127
Alignment:
Q  74 gtatgagaaagaaggttat-acaaaagttattataaaattgttcaacaaatatcatttttcttaaattaa 142  Q
    ||||||||||||| ||| | |||||| |||||||||||| |||  ||||||||||||| |||||| ||||    
T  16368058 gtatgagaaagaaagttgttacaaaaattattataaaatggttgtacaaatatcatttctcttaatttaa 16368127  T

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