View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_61 (Length: 247)
Name: NF15789_low_61
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 36903210 - 36903428
Alignment:
| Q |
16 |
cactcatcatgttcctttttgttctcacatctcaaaaacgaggaaaagattttcgcagggatttgccactgaaactttatatcgggctaatttcactttt |
115 |
Q |
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| T |
36903210 |
cactcatcatgttcctttttgttctcacatctcaaaaacgagcaaaagattttcgcagggatttgccactgaaactttatatcgggctaatttcactttt |
36903309 |
T |
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| Q |
116 |
tgtgtcgattgcttctatgattgtttcgttctgcactggctacttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagct |
215 |
Q |
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| T |
36903310 |
tgtgtcgattgcttctatgattgtttcgttctgcactggctacttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagct |
36903409 |
T |
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| Q |
216 |
tgtttgcctgtggttttct |
234 |
Q |
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||||||||||||||||||| |
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| T |
36903410 |
tgtttgcctgtggttttct |
36903428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 36883406 - 36883616
Alignment:
| Q |
17 |
actcatcatgttcctttttgttctcacatctcaaaaacgaggaaaagattttcgcagggatttgccactgaaactttatatcgggctaatttcacttttt |
116 |
Q |
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||||||||||||||||| ||||||| |||| |||| || ||||||||||| | |||||||||||||||||| | | ||||||| ||| || ||| |
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| T |
36883406 |
actcatcatgttcctttcaattctcacttctcgtaaacaagccaaagattttcgtcgagatttgccactgaaacttcttcttgggctaagttctctcttt |
36883505 |
T |
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| Q |
117 |
gtgtcgattgcttctatgattgtttcgttctgcactggctacttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagctt |
216 |
Q |
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| T |
36883506 |
gtgtccattgcttcaatgtttatttcattctgcactggacatttttttctgcttagccataattttaagtcgattttgttcccaatttatgcagcaactt |
36883605 |
T |
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| Q |
217 |
gtttgcctgtg |
227 |
Q |
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| T |
36883606 |
gtttgcctgtg |
36883616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 36893409 - 36893619
Alignment:
| Q |
17 |
actcatcatgttcctttttgttctcacatctcaaaaacgaggaaaagattttcgcagggatttgccactgaaactttatatcgggctaatttcacttttt |
116 |
Q |
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|||||||||||| |||| | ||||||| ||| ||||| || ||||||||||| | ||||||||| |||||||| | | ||| ||| ||| |||||| |
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| T |
36893409 |
actcatcatgtttctttctattctcacttctagaaaacaagccaaagattttcgtcgcgatttgccattgaaacttcttcttgggttaagttctcttttt |
36893508 |
T |
|
| Q |
117 |
gtgtcgattgcttctatgattgtttcgttctgcactggctacttttttctgcttagccacaaatttaagttgattttgttctcaatttctgcagcagctt |
216 |
Q |
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||||| |||||||| ||| ||||||| ||||||||||| | ||||||||||||||||| || ||||||| | |||||||| |||||| |||||| ||| |
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| T |
36893509 |
gtgtccattgcttcaatgtttgtttcattctgcactggacatttttttctgcttagccataattttaagtcggttttgttcccaatttacgcagcaactt |
36893608 |
T |
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| Q |
217 |
gtttgcctgtg |
227 |
Q |
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||||||||||| |
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| T |
36893609 |
gtttgcctgtg |
36893619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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