View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_73 (Length: 226)
Name: NF15789_low_73
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_73 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 36199980 - 36199756
Alignment:
| Q |
1 |
agtaatggttctaattagaatgatgattgatcaataaaattgagaaaagaaaatttcttttgatatcttgtgttttgatcaattgaatgggatatcctaa |
100 |
Q |
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| T |
36199980 |
agtaatggttctaattagaatgatgattgatcaataaaattgagaaaagaaaatttcttttgatatcttgtgttttgatcaattgaatgggatatcctaa |
36199881 |
T |
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| Q |
101 |
cagactatgttttgacctgataaataattatgtaattgtataggnnnnnnnnactatgtagggaatctcaatattttaggggatgctttattgattttca |
200 |
Q |
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| T |
36199880 |
cagactatgttttga-ctgataaataattatgtaattgtataggttttttttactatgtagggaatctcaatattttaggggatgctttattgattttca |
36199782 |
T |
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| Q |
201 |
tacagattcattggaatacaggtttt |
226 |
Q |
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| T |
36199781 |
tacagattcattggaatacaggtttt |
36199756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 36214303 - 36214268
Alignment:
| Q |
105 |
ctatgttttgacctgataaataattatgtaattgta |
140 |
Q |
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| T |
36214303 |
ctatgttttgacctgataaataattatgtaattgta |
36214268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 16958394 - 16958304
Alignment:
| Q |
3 |
taatggttctaattagaatgatgattgatcaataaaattgagaaaagaaaatttcttttgatatcttgtgttttgatcaattgaatgggata |
94 |
Q |
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| T |
16958394 |
taatgattctaactagaataaagattgatcagcaaaattgagaaaagaagaattctttgaatatctt-tgttattatcaattgaatgggata |
16958304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 30036629 - 30036685
Alignment:
| Q |
4 |
aatggttctaattagaatgatgattgatcaataaaattgagaaaagaaaatttcttt |
60 |
Q |
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|||| |||||| |||||| | |||||||||| |||||||||||||||| | |||||| |
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| T |
30036629 |
aatgattctaaatagaataaagattgatcaaaaaaattgagaaaagaagaattcttt |
30036685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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