View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15789_low_74 (Length: 225)
Name: NF15789_low_74
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_74 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 33388596 - 33388809
Alignment:
| Q |
1 |
taacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactggaggcgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388596 |
taacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactggaggcgg |
33388695 |
T |
|
| Q |
101 |
agctggctcaaaaatcttctgctgcatagctgggggaagggtggaatacagtgataacactttcacagggcccaccttctcccctaaatttgcaactttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388696 |
agctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacagggcccaccttctcccctaaatttgcaactttg |
33388795 |
T |
|
| Q |
201 |
tttgatattcttcg |
214 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
33388796 |
tttgatatttttcg |
33388809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 38779637 - 38779834
Alignment:
| Q |
1 |
taacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactggaggcgg |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || |
|
|
| T |
38779637 |
taacatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggggcctccctccttaactggaggtgg |
38779736 |
T |
|
| Q |
101 |
agctggctcaaaaatcttctgctgcatagctgggggaagggtggaatacagtgataacactttcacagggcccaccttctcccctaaatttgcaactt |
198 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||| | || | |||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
38779737 |
agctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacctggtcccccatgtttgcaactt |
38779834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 20816507 - 20816333
Alignment:
| Q |
2 |
aacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactggaggcgga |
101 |
Q |
| |
|
|||||| |||||||||| || ||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| ||| |
|
|
| T |
20816507 |
aacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaactggaggtgga |
20816408 |
T |
|
| Q |
102 |
gctggctcaaaaatcttctgctgcatagctgggggaagggtggaatacagtgataacactttcacagggcccacc |
176 |
Q |
| |
|
||||||||||||||| | || |||||||| |||||||| || ||||||| | || |||||||||||||||||| |
|
|
| T |
20816407 |
gctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccacc |
20816333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University