View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15789_low_77 (Length: 221)
Name: NF15789_low_77
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_77 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 17589177 - 17589382
Alignment:
| Q |
1 |
cggaacgcttggttgaaaacccacataaatgatagaataatctcagctaatgtcattagaagccatggatatgaaataaataaatttttgatacggtagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17589177 |
cggaacgcttggttgaaaacccacataaatgatagaataatctcagctaatgtcattagaagccatggatatgaaataaataaatttttgatacggtagt |
17589276 |
T |
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| Q |
101 |
aaaagagaaacaaaatgcatatgaagtggaagactatgtgagttctatgtagaggtaaccatgattgaacggtttctttgtgaagggtgaaggttgccat |
200 |
Q |
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| T |
17589277 |
aaaagagaaacaaaatgcatatgaagtggaagactatgtgagttctatgtagaggtaaccatgattgaacggtttctttgtgaagggtgaaggttgccat |
17589376 |
T |
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| Q |
201 |
aacaat |
206 |
Q |
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|||||| |
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| T |
17589377 |
aacaat |
17589382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 270193 - 269999
Alignment:
| Q |
7 |
gcttggttgaaaacccacataaatgatagaataatctcagctaatgtcattagaagccatggatatgaaataaataaatttttgatacggtagtaaaaga |
106 |
Q |
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||||||||||||| ||||| | ||||||||||| |||||||| ||||||||||| |||||||||||| |||| ||||| |||||||| || ||||||| |
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| T |
270193 |
gcttggttgaaaaaccacaagactgatagaataagctcagctagtgtcattagaatccatggatatgatataatgaaattgttgatacgataataaaaga |
270094 |
T |
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| Q |
107 |
gaaacaaaatgcatatgaagtggaagactatgtgagttctatgtagaggtaaccatgattgaacggtttctttgtgaagggtgaaggttgccata |
201 |
Q |
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| T |
270093 |
gaaacaagacacatatgaagtggaaaaatatgtgaagtctacttagaggtaaacatgattggactgtttctttgtgaagtgtgaaggttgtcata |
269999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 16386025 - 16386230
Alignment:
| Q |
1 |
cggaacgcttggttgaaaacccacataaatgatagaataatctcagctaatgtcattagaagccatggatatgaaataaataaatttttgatacggtagt |
100 |
Q |
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||||| ||||||| | ||| |||||||||||| | ||||| |||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||||| |
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| T |
16386025 |
cggaatgcttggtgggaaaaccacataaatgaaaaaataagctcagctagtgtcattagaaaccatggatatgaaatgaataaattattgatacggtagt |
16386124 |
T |
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| Q |
101 |
aaaagagaaacaaaatgcatatgaagtggaagactatgtgagttctatgtagaggtaaccatgattgaacggtttctttgtgaagggtgaaggttgccat |
200 |
Q |
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||| ||||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
16386125 |
aaatgagaaacaagacacatatgaagtggaagattatgtgagttctgcttagaggtaaccatgattgaactgtttctttgtgaagtgtgaaggttgccat |
16386224 |
T |
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| Q |
201 |
aacaat |
206 |
Q |
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|||||| |
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| T |
16386225 |
aacaat |
16386230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 11808 - 11609
Alignment:
| Q |
1 |
cggaacgcttggttgaaaacccacataaatgatagaataatctcagctaatgtcattagaagccatggatatgaaataaataaatttttgatacggtagt |
100 |
Q |
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||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
11808 |
cggaatgcttggttgaaaaaccacaaaaatgatagaataatctcagctattgtcattagaaaccatggatatgaaataaacaaattgctgatacggtagt |
11709 |
T |
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| Q |
101 |
aaaagagaaacaaaatgcatatgaagtggaagactatgtgagttctatgtagaggtaaccatgattgaacggtttctttgtgaagggtgaaggttgccat |
200 |
Q |
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||||||||||||| | ||| |||||||||||| ||||| || ||| |||||||||||||| |||||| |||||||||||||| |||||||||||||| |
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| T |
11708 |
aaaagagaaacaagacacatgtgaagtggaagattatgtaagctcttcttagaggtaaccatggttgaactgtttctttgtgaagtgtgaaggttgccat |
11609 |
T |
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