View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15789_low_78 (Length: 217)
Name: NF15789_low_78
Description: NF15789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15789_low_78 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 12581613 - 12581826
Alignment:
| Q |
1 |
attgtaagattgtgatttcctttgttttgctccttagctgctttatatagatttcaacaattgaaaacaacacaatcaaataaatatggtcaaagaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12581613 |
attgtaagattgtgatttcctttgttttgctccttagctgctttatatagatttcaacaattgaaaacaacacaatcaaataaatatgttcaaagaacaa |
12581712 |
T |
|
| Q |
101 |
atagttgtaatattgttatgtcatttaatggttgtgttagcaaaacacatgacaacgtaagattatatttgatcaaggctctcatttccattcatttttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12581713 |
atagttgtaatattgttatgtcatttaatggttgtgttagcaaaacacatgacaacggaagattatatttgatcaaggctctcatttccattcatttttc |
12581812 |
T |
|
| Q |
201 |
cactctttcctccc |
214 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
12581813 |
cactcttttctccc |
12581826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University